| acquisition_end_time |
The time that data collection ended for this activity |
| acquisition_start_time |
The time that data collection started for this activity |
| acquisition_strategy |
The acquisition strategy used in the mass spectrometry run |
| activity_speed_id |
|
| activity_time_id |
|
| actual_concentration |
Achieved final concentration of this reagent in the well after |
| addition_time |
When this reagent was added, relative to the start of the |
| additional_information |
Additional information pertaining to these data, including SP Project ID and ... |
| aerosol_type |
The type or method of aerosol collection |
| ag_mg_per_kg |
Silver concentration in mg/kg |
| agitation_speed_rpm |
Agitation/shaking speed in RPM (0 for static) |
| agrochem_addition |
Addition of fertilizers, pesticides, etc |
| air_temp_regm |
Information about treatment involving an exposure to varying temperatures; sh... |
| al_sat |
Aluminum saturation (esp |
| al_sat_meth |
Reference or method used in determining Al saturation |
| albite_percent |
Albite (NaAlSi3O8) weight percent |
| alkalinity |
The ability of a solution to neutralize acids to the equivalence point of car... |
| alkalinity_method |
Method used for alkalinity measurement |
| alkyl_diethers |
Concentration of alkyl diethers |
| alpha |
Van Genuchten shape parameter alpha (1/cm) |
| alt |
Heights of objects such as airplanes, space shuttles, rockets, atmospheric ba... |
| alt_id |
|
| alternate_id |
|
| alternate_identifier_type |
|
| alternative_identifiers |
|
| alternative_names |
|
| aminopept_act |
Measurement of aminopeptidase activity (Unit: mol/L/h) |
| ammonium |
Concentration of ammonium in the sample |
| amp_index |
1-based amplifier index (aligns with Amplifier_Gain_N) |
| amplifiers |
Amplifier sensitivity entries (one per signal channel) |
| analysis_code |
Athena or Larch internal code from the |
| analysis_type |
The type(s) of analysis planned for this sample |
| analyte_category |
omics type for easier search, optional |
| analyte_id |
FK reference to a ProcessedSample representing the substance analyzed in this... |
| ances_data |
Information about either pedigree or other ancestral information description |
| ancestor_id |
|
| ancestor_type |
Class/table name of the ancestor node |
| annotation_database |
Primary annotation database used (e |
| annual_precpt |
The average of all annual precipitation values known or an estimated equivale... |
| annual_temp |
Mean annual temperature (Unit: C) |
| antibiotic_regm |
Information about treatment involving antibiotic administration; should inclu... |
| aq |
acquisition number |
| as_mg_per_kg |
Arsenic concentration in mg/kg |
| associated_dois |
A list of DOIs associated with this study |
| atmospheric_data |
Measurement of atmospheric data; can include multiple data |
| average_well_color_development |
Average Well Color Development (AWCD) metric for Ecoplate |
| axes |
|
| ba_mg_per_kg |
Barium concentration in mg/kg |
| bac_prod |
Bacterial production in the water column measured by isotope uptake |
| bac_resp |
Measurement of bacterial respiration in the water column |
| bacteria_carb_prod |
Measurement of bacterial carbon production |
| beam_attenuation_material |
Attenuator material (e |
| beam_attenuation_um |
Attenuator thickness in microns |
| beamline |
Beamline identifier (e |
| beta_glucosidase_ug_pnp_per_g_per_h_id |
|
| biochem_oxygen_dem |
a measure of the relative oxygen-depletion effect of a waste contaminant |
| biol_stat |
The level of genome modification |
| biotic_regm |
Information about treatment(s) involving use of biotic factors such as bacter... |
| biotic_relationship |
Description of relationship(s) between the subject organism and other organis... |
| bishomohopanol |
Concentration of bishomohopanol |
| blank_mean |
Mean measurement of uninoculated control wells |
| boron_id |
|
| br_mg_per_kg |
Bromine concentration in mg/kg |
| bromide |
Concentration of bromide (Unit: ppm) |
| bulk_density_id |
|
| bulk_elect_conductivity |
Electrical conductivity is a measure of the bulk soil ability to carry electr... |
| calcium |
Concentration of calcium in the sample (Unit: mg/L or umol/L or ppm) |
| calcium_id |
|
| calibration |
|
| calibration_data |
Reference to the raw instrument data file used for calibration |
| calibration_standard |
The reference standard used for calibration |
| calibration_target |
The measurement being calibrated |
| carb_dioxide |
Amount of carbon dioxide measured in the air the day of sampling |
| carb_monoxide |
Amount of carbon monoxide measured in the air the day of sampling |
| carb_nitro_ratio |
Ratio of amount or concentrations of carbon to nitrogen |
| carbon_source |
Carbon source in this well (e |
| cas |
A unique numerical identifier assigned by the Chemical Abstract Service (CAS)... |
| cation_exchange_capacity_id |
|
| cbi |
Confidential Business Information flag (yes/no) |
| cd_mg_per_kg |
Cadmium concentration in mg/kg |
| ce_mg_per_kg |
Cerium concentration in mg/kg |
| chamber_index |
Ion chamber index (1=I0, 2=It, 3=Iref) |
| chamber_length_mm |
Physical ion chamber length in mm |
| changelog |
|
| channel_number |
The index of the detector channel within the instrument run |
| check_standard_spacing |
|
| chem_administration |
List of chemical compounds administered to the host or site where sampling oc... |
| chem_mutagen |
Treatment involving use of mutagens; should include the name of mutagen, amou... |
| chem_oxygen_dem |
a measure of the relative oxygen-depletion effect of a waste contaminant |
| chemical_conversion_category |
The category of chemical conversion process |
| chi_square |
Chi-square statistic from the LCF fit |
| chloride |
Concentration of chloride in the sample (Unit: mg/L or ppm) |
| chlorite_percent |
Chlorite ((Mg,Fe)3(Si,Al)4O10(OH)2 (Mg,Fe)3(OH)6) weight percent |
| chlorophyll |
Concentration of chlorophyll (Unit: mg/m3 or ug/L) |
| chromatography_type |
Type of chromatography used in the method (e |
| cl_mg_per_kg |
Chlorine concentration in mg/kg |
| clay_pct_id |
|
| col_index |
1-based column index (aligns with Analog_In_Signal_Type_N) |
| col_name |
Detector column name (e |
| collaborating_institution |
|
| collection_date |
'The date of sampling as an instance |
| collection_mode |
The collection mode for the mass spectrometry data (e |
| collection_time |
The time of sampling as an instance (single point) |
| color_code |
Color indicates the max altitude |
| column |
The name or identifier of the chromatography column used |
| column_dimensions |
Dimensions of the chromatography column used in the process |
| column_manufacturer |
Name of the institution that manufactured the chromatography column |
| commercial_media_catalog |
Reference to commercial media catalog entry if applicable |
| component_description |
Provide a short statement describing the function of the construct |
| component_name |
Provide a one-to-three word name based on the component |
| compound |
Identity of the reagent added |
| compound_name |
The common name of the material |
| compression_type |
|
| computed_at |
Timestamp when this row was last computed by the refresh job |
| concentration |
Concentration of the chemical, string for now because LC protocols specify th... |
| concentration_ug_per_uL |
Concentration of the substance in micrograms per microliter |
| concentration_unit |
Unit for stock_concentration, requested_concentration, and |
| condition_received |
The condition of the sample when received |
| conduc |
Electrical conductivity of water |
| confirmed_receipt |
Whether receipt of the sample was confirmed |
| connected_pores_fraction |
Fraction of connected pore volume out of total volume (unitless) |
| construct_component |
Select the construct component type |
| container_size_id |
|
| container_size_ml |
The volume of the container an analyte is stored in or an activity takes plac... |
| container_type |
Physical container used for the culture or sample (flask, tube, plate, etc |
| contains |
|
| contaminant_strains |
Known or detected contaminant strains (if any) |
| controlled_term_provider |
name of ontology or other controlled term provider |
| copper_id |
|
| core_group |
The category of soil core taken according to the MONet sampling protocol |
| core_section |
The section of the core |
| count |
|
| cr_mg_per_kg |
Chromium concentration in mg/kg |
| creation_date |
Date the entity or preparation was created |
| crop_rotation |
Whether or not crop is rotated, and if yes, rotation schedule |
| crystal |
Monochromator crystal material (e |
| crystal_cut |
Crystal reflection (e |
| crystal_detune_pct |
Crystal detuning percentage for harmonic rejection |
| cs_mg_per_kg |
Cesium concentration in mg/kg |
| cu_filter |
|
| cu_mg_per_kg |
Copper concentration in mg/kg |
| cult_root_med |
Name or reference for the hydroponic or in vitro culture rooting medium; can ... |
| cur_land_use |
Present state of sample site |
| cur_vegetation |
Vegetation classification from one or more standard classification systems, o... |
| cur_vegetation_meth |
Reference or method used in vegetation classification |
| custodian_id |
|
| cv_percent |
Coefficient of variation across technical replicates |
| cycle_id |
Integer identifying the Design-Build-Test-Learn iteration this plate belongs ... |
| data_rows |
Per-energy-point representative fluorescence or transmission values |
| data_val |
Measured normalised spectrum value at this point |
| database |
|
| date_received |
The date the sample was received |
| dd_ms2_resolution |
Data-dependent MS2 resolution setting used in the mass spectrometry method |
| density |
Density of the sample, which is its mass per unit volume (aka volumetric mass... |
| depth |
The vertical distance below local surface |
| descendant_id |
|
| descendant_type |
Class/table name of the descendant node (same vocabulary as ancestor_type) |
| description |
Human-readable description for the entity or activity |
| detection_limit |
|
| detector |
|
| device_type |
|
| diether_lipids |
Concentration of diether lipids; can include multiple types of diether lipids... |
| digestion_method |
Named digestion method applied, when the category is protease_cleavage |
| diss_carb_dioxide |
Concentration of dissolved carbon dioxide in the sample or liquid portion of ... |
| diss_hydrogen |
Concentration of dissolved hydrogens (Unit: umol/L) |
| diss_inorg_carb |
Dissolved inorganic carbon concentration in the sample, typically measured af... |
| diss_inorg_nitro |
Concentration of dissolved inorganic nitrogen |
| diss_inorg_phosp |
Concentration of dissolved inorganic phosphorus in the sample |
| diss_org_carb |
Concentration of dissolved organic carbon in the sample, liquid portion of th... |
| diss_org_nitro |
Dissolved organic nitrogen concentration measured as: total dissolved nitroge... |
| diss_oxygen |
Concentration of dissolved oxygen |
| doi_category |
The resource type the corresponding doi resolves to |
| doi_provider |
The authority, or organization, the DOI is associated with |
| doi_value |
|
| donor_organism |
Provide the scientific name (genus and species) of the organism from which th... |
| down_par |
Visible waveband radiance and irradiance measurements in the water column |
| drainage_class |
Drainage classification from a standard system such as the USDA system |
| duration_min |
how long something took, in minutes |
| e0_ev |
Absorption edge energy E0 in eV |
| e0_shift_used |
Whether an overall E0 energy shift was applied |
| edge |
Absorption edge measured (e |
| efficiency_percent |
percentage of volatile solids removed from the anaerobic digestor |
| element |
Target element (e |
| elev |
Elevation of the sampling site is its height above a fixed reference point, m... |
| email |
A contactable email address associated with a person or institution |
| emsl_activity |
Nullable string linking a Sample or SamplingActivity to a named EMSL activity... |
| emulsions |
amount or concentration of substances such as paints, adhesives, mayonnaise, ... |
| encoded_traits |
Should include key traits like antibiotic resistance or xenobiotic |
| ended_at_time |
|
| enrichment_type |
Type of enrichment performed, when this process is an enrichment step |
| env_broad_scale |
'Report the major environmental system the sample or specimen came from |
| env_local_scale |
'Report the entity which are in your sample or specimens local vicinity and w... |
| env_medium |
'Report the environmental material immediately surrounding the sample or spec... |
| execution_resource |
|
| experimental_factor |
Experimental factors are essentially the variable aspects of an experiment de... |
| experimental_factor_other |
Other details about your sample that you feel can't be accurately represented... |
| exposure_sensitivity |
Sensitivity the entity has if exposed (e |
| exposure_time_per_frame |
|
| external_identifiers |
List of external identifiers associated with this entity or activity |
| extraction_method |
If you (the user) performed an extraction preparation or processing before se... |
| extraction_target |
The target analyte(s) or compound class(es) for the extraction process |
| extreme_event |
Unusual physical events that may have affected microbial populations |
| facility |
Synchrotron facility name (e |
| fao_class |
Soil classification from the FAO World soil distribution from International S... |
| fertilizer_regm |
Information about treatment involving the use of fertilizers; should include ... |
| fid |
Free induction decay |
| file_curie |
an identifier for a file that resolves to the file's accessible location |
| file_type |
|
| files |
|
| filesize |
Size of the file in bytes |
| filter_material |
The porous material on which solid particles present in the fluid which flows... |
| filter_method |
Type of filter used or how the sample was filtered |
| filter_pore_size_um |
The pore size of the filter used in the filtration process, in micrometers |
| final_concentration_mg_per_ml |
The concentration of the sample or analyte in the processedSample resulting f... |
| final_mass_mg |
The mass of sample or analyte in the processedSample resulting from this acti... |
| final_vol_ml |
The volume of sample resulting from this activity, in milliliters |
| fire |
Historical and/or physical evidence of fire |
| first_blh |
First boundary layer height candidate (meters) (Unit: m) |
| first_blh_quality_index |
Quality index for first boundary layer height candidate (-999 if no candidate... |
| first_cbh |
First cloud base (meters) or vertical visibility (meters) (-999 if no cloud b... |
| first_name |
|
| fit_label |
Iteration label for EXAFS fits extracted from filename |
| fit_range_max |
Upper bound of fit range (eV for XANES, A^-1 for EXAFS) |
| fit_range_min |
Lower bound of fit range (eV for XANES, A^-1 for EXAFS) |
| fit_range_unit |
Unit of fit range (eV for XANES, A^-1 for EXAFS) |
| fit_val |
LCF fitted curve value at this point |
| fitting_model |
|
| flag |
A flag indicating the QC status of the data |
| flag_ag |
|
| flag_albite |
|
| flag_as |
|
| flag_avg |
|
| flag_ba |
|
| flag_boron |
|
| flag_br |
|
| flag_calcium |
|
| flag_cd |
|
| flag_ce |
|
| flag_cec |
|
| flag_chlorite |
|
| flag_cl |
|
| flag_copper |
|
| flag_cr |
|
| flag_cs |
|
| flag_cu |
|
| flag_ga |
|
| flag_gypsum |
|
| flag_halite |
|
| flag_hornblende |
|
| flag_in |
|
| flag_iron |
|
| flag_kaolinite |
|
| flag_la |
|
| flag_magnesium |
|
| flag_manganate |
|
| flag_mbc |
|
| flag_mbc_avg |
|
| flag_mbn |
|
| flag_mbn_avg |
|
| flag_microcline |
|
| flag_mo |
|
| flag_muscovite |
|
| flag_nb |
|
| flag_nh4n |
|
| flag_nh4n_avg |
|
| flag_ni |
|
| flag_no3n |
|
| flag_no3n_avg |
|
| flag_pb |
|
| flag_potassium |
|
| flag_pyrite |
|
| flag_quartz |
|
| flag_rb |
|
| flag_sb |
|
| flag_se |
|
| flag_sn |
|
| flag_sodium |
|
| flag_sr |
|
| flag_sulfate |
|
| flag_th |
|
| flag_tkn |
|
| flag_tn |
|
| flag_tn_avg |
|
| flag_toc |
|
| flag_toc_avg |
|
| flag_total_bases |
|
| flag_total_carbon |
|
| flag_total_nitrogen |
|
| flag_total_sulfur |
|
| flag_u |
|
| flag_v |
|
| flag_xct |
Data quality flag for the XCT analysis |
| flag_y |
|
| flag_zinc |
|
| flag_zn |
|
| flooding |
Historical and/or physical evidence of flooding |
| flow_rate_ul_min |
Flow rate of the mobile phase, in microliters per minute |
| flow_rate_x_mm3_per_sec |
Total flow rate from pore network model in X direction (mm^3/s) |
| flow_rate_y_mm3_per_sec |
Total flow rate from pore network model in Y direction (mm^3/s) |
| flow_rate_z_mm3_per_sec |
Total flow rate from pore network model in Z direction (mm^3/s) |
| fluor |
Raw or converted fluorescence of water |
| fragmentation |
fragmentation technique used in the mass spectrometry run |
| frames_recording_per_projection |
|
| functional_annotation_id |
|
| functional_identifier |
|
| funding_sources |
|
| fungicide_regm |
Information about treatment involving use of fungicides; should include the n... |
| fy_channel_num |
Number of active fluorescence detector channels |
| fy_electronics |
Fluorescence detector electronics model (e |
| fy_element |
Target element detected by fluorescence detector (e |
| fy_transition |
X-ray transition detected (e |
| ga_mg_per_kg |
Gallium concentration in mg/kg |
| gain |
Amplifier gain value |
| gain_unit |
Gain unit as written in file (e |
| gas |
|
| gas_index |
1-based gas component index within the chamber mixture |
| gas_name |
Fill gas name (e |
| gaseous_environment |
Use of conditions with differing gaseous environments; should include the nam... |
| gaseous_substances |
amount or concentration of substances such as hydrogen sulfide carbon dioxide... |
| gene_family |
Gene family or marker used for the phylogeny (e |
| genetic_mod |
Genetic modifications of the genome of an organism, which may occur naturally... |
| genotype_segment_category |
Category of genetic modification or segment |
| genotype_segment_name |
Provide a name that describes the genotype modification engineered |
| geo_loc_name |
The geographical origin of the sample as defined by the country or sea name f... |
| glucosidase_act |
Measurement of glucosidase activity (Unit: mol/L/h) |
| gravity |
Information about treatment involving use of gravity factor to study various ... |
| growth_facil |
Type of facility or location from where the sample was collected or |
| growth_habit |
Characteristic shape appearance or growth form of a plant species |
| growth_hormone_regm |
Information about treatment involving use of growth hormones; should include ... |
| growth_medium |
Method of growth and medium/materials used |
| growth_time |
Total growth time for the culture |
| guid_source |
Source system for the sample GUID (e |
| gwc_percent_id |
|
| gypsum_percent |
Gypsum (CaSO4 2H2O) weight percent |
| halite_percent |
Halite (NaCl) weight percent |
| has_maximum_numeric_value |
|
| has_minimum_numeric_value |
|
| has_numeric_value |
The numeric value of the quantity |
| has_participants |
Links to a record of a person and their roles for this study |
| has_raw_value |
|
| has_unit |
The human-readable unit name |
| has_value_unit |
|
| heavy_metals |
Heavy metals present and concentrations; can include multiple heavy metals an... |
| heavy_metals_meth |
Reference or method used in determining heavy metals |
| herbicide_regm |
Information about treatment involving use of herbicides; information about tr... |
| hop_depth |
Number of hops between ancestor and descendant (1 = direct parent) |
| horizon_meth |
Reference or method used in determining the horizon |
| hornblende_percent |
Hornblende (Ca,Na)2-3(Mg,Fe,Al)5(Al,Si)8O22(OH)2 weight percent |
| host_age |
Age of host at the time of sampling; relevant scale depends on species and st... |
| host_common_name |
Common name for the host organism (e |
| host_disease_stat |
List of diseases with which the host has been diagnosed; can include multiple... |
| host_dry_mass |
Measurement of dry mass |
| host_genotype |
Observed genotype |
| host_height |
The height of subject |
| host_infra_spec_name |
Taxonomic information about the host below subspecies level |
| host_infra_spec_rank |
Taxonomic rank information about the host below subspecies level, such as var... |
| host_length |
The length of subject |
| host_life_stage |
Description of life stage of host |
| host_phenotype |
Phenotype of human or other host |
| host_spec_range |
The range and diversity of host species that an organism is capable of infect... |
| host_symbiont |
The taxonomic name of the organism(s) found living in mutualistic, commensali... |
| host_taxid |
NCBI taxon ID |
| host_tot_mass |
Total mass of the host at collection |
| host_wet_mass |
Measurement of wet mass |
| humidity |
Amount of water vapor measured in the air the day of sampling |
| humidity_regm |
Information about treatment involving an exposure to varying degrees of humid... |
| iat |
Ion accumulation time setting used in the mass spectrometry method |
| id |
|
| image_voxel_size_is |
|
| in_mg_per_kg |
Indium concentration in mg/kg |
| in_mobile_phase |
|
| in_protocol |
The SampleProcessingProtocol (the recipe) that this step follows |
| in_run |
The SampleProcessingRun (one concrete execution) that this edge belongs to |
| incubation_temp_c |
|
| incubation_time |
|
| incubation_time_hours |
Incubation duration in hours |
| indust_eff_percent |
percentage of industrial effluents received by wastewater treatment plant |
| infiltration_1 |
Amount of time it takes to accomplish the first infiltration activity |
| infiltration_2 |
Amount of time it takes to accomplish the second infiltration activity |
| infiltration_notes |
Provide any details, issues, or context needed to understand the infiltration... |
| inhutch_mirror_coating |
In-hutch focusing mirror coating material |
| inhutch_mirror_cutoff_kev |
In-hutch mirror cutoff energy in keV |
| initiation_date_inoculation |
The date the sample was inoculated |
| initiation_date_plant |
The date the plant part of the sample was initiated |
| injection |
Type of injection used in the mass spectrometry method |
| injection_volume |
|
| injection_volume_ul |
|
| inoculum_volume_ul |
Volume of inoculum added (0 for blanks) |
| inorg_particles |
concentration of particles such as sand, grit, metal particles, ceramics, etc |
| insertion_device |
Insertion device description (wiggler, undulator, bending magnet) |
| inspection_method |
Method used to inspect or verify purity (visual, sequencing, etc |
| instrument |
|
| instrument_alt_id_provider |
|
| instrument_id |
|
| instrument_operator |
User who operated the instrument |
| instrument_parameters |
|
| instrument_used |
Instrument used for the measurement |
| integration_times |
Integration times string as written in file header |
| internal_calibration |
Whether internal calibration was used |
| ion_chambers |
Ion chamber gas mixture components parsed from user comment |
| ionization |
Type of ionization used in the mass spectrometry method |
| iron_id |
|
| is_pressurized |
Whether or not pressure was applied to a thing or process |
| isol_growth_condt |
Publication reference in the form of pubmed ID (PMID), digital object |
| isolation_window |
|
| isotope_exposure |
List isotope exposure or addition applied to your sample |
| item_number |
The item number of the purchased material |
| kaolinite_percent |
Kaolinite (Al2Si2O5(OH)4) weight percent |
| known_as |
Common name or identifier for the substance |
| kwgt |
k-weighting exponent used in EXAFS region |
| la_mg_per_kg |
Lanthanum concentration in mg/kg |
| label_format |
|
| label_text |
The label on the stored processed sample, if applicable (e |
| labeling_method |
Chemical labeling strategy applied in this process (e |
| language |
|
| last_name |
|
| latitude |
Latitude coordinate of the sampling site in WSG 84 format |
| lcf_data_rows |
Per-point fit curve data for plotting |
| lcf_type |
LCF analysis subtype, XANES or EXAFS |
| light_intensity |
Measurement of light intensity |
| light_regm |
Information about treatment(s) involving exposure to light including both lig... |
| lims_barcode |
LIMS barcode identifier |
| lims_id |
An EMSL internal LIMS identifier for your sample |
| lims_protocol_instance_id |
Reference to the L7 protocol_instance that corresponds to this sample process... |
| lims_resource_id |
L7 resource_id for the instrument, if known |
| lims_task_instance_id |
L7 task_instance_id for the activity, if known |
| link_addit_analys |
Link to additional analysis results performed on the sample |
| link_class_info |
Link to digitized soil maps or other soil classification information |
| link_climate_info |
Link to climate resource |
| local_class |
Soil classification based on local soil classification system |
| local_class_meth |
Reference or method used in determining the local soil classification |
| location |
|
| longitude |
Longitude coordinate of the sampling site in WSG 84 format |
| loop_count |
Number of MS2 scans to be acquired between each full MS scan |
| m0_coating |
M0 mirror coating material (e |
| m0_cutoff_kev |
M0 mirror X-ray cutoff energy in keV |
| m1_coating |
M1 mirror coating material |
| magnesium |
Concentration of magnesium in the sample (Unit: umol/kg or mol/L or mg/L or p... |
| magnesium_id |
|
| maintenance |
Maintenance notes or directions to a maintenance log |
| manganate_id |
|
| mass_analyzer_type |
The type of mass analyzer present in the instrument, if applicable (e |
| mass_range_max |
The maximum mass observable by this run (in m/z) |
| mass_range_min |
The minimum mass observable by this run (in m/z) |
| mbc_avg |
|
| mbc_id |
|
| mbn_avg |
|
| mbn_id |
|
| md5checksum |
|
| mean_frict_vel |
Measurement of mean friction velocity (Unit: m/s) |
| mean_peak_frict_vel |
Measurement of mean peak friction velocity (Unit: m/s) |
| mean_total_cpc_concentration |
Mean concentration obtained from Condensation Particle Counter (Unit: μm) |
| mean_total_pops_concentration |
Mean concentration obtained from Portable Optical Particle Spectrometer (Unit... |
| measure_type |
Whether the measurement recorded is a single measurement, one of a set of re... |
| measurement_type |
Type of plate measurement (optical_density, fluorescence, flow_cytometry) |
| mechanical_damage |
Information about any mechanical damage exerted on the plant; can include mul... |
| media_additions |
Additional components added to the media (antibiotics, inducers, etc |
| media_formulation |
Formulation method of the media (manual mix, commercial, etc |
| media_recipe |
Reference or description of recipe used to prepare media |
| media_ref |
FK reference to a prepared media processedSample used in the activity |
| media_type |
Purpose/context of the media preparation |
| media_volume_ul |
Volume of media added to this well (microlitres) |
| metaproteomics_analysis_category |
The category of metaproteomics analysis being performed, if applicable |
| metaproteomics_result_type |
The type of metaproteomics results file |
| methane |
Methane (gas) amount or concentration at the time of sampling |
| method_development |
If your samples are TEST sample ONLY, please provide information on what you'... |
| mg_workflow_step |
Metagenomics workflow step that produced this product (e |
| micro_biomass_c_meth |
Reference or method used in determining microbial biomass |
| micro_biomass_n_meth |
Reference or method used in determining microbial biomass nitrogen |
| microbial_biomass |
The part of the organic matter in the soil that constitutes living microorgan... |
| microbial_biomass_c |
The part of the organic matter in the soil that constitutes living microorgan... |
| microbial_biomass_meth |
Reference or method used in determining microbial biomass |
| microbial_biomass_n |
The part of the organic matter in the soil that constitutes living microorgan... |
| microcline_percent |
Microcline (KAlSi3O8) weight percent |
| middle_initial |
|
| mineral_nutr_regm |
Information about treatment involving the use of mineral supplements; should ... |
| mirror_angle_mrad |
M0 mirror angle in mrad |
| misc_param |
Any other measurement performed or parameter collected that is not listed her... |
| mo_mg_per_kg |
Molybdenum concentration in mg/kg |
| mobile_phase |
Description of a mobile phase used in a chromatography method (e |
| mobile_phase_percentage |
The proportion of the mobile phase segment in the overall mobile phase sequen... |
| mode |
|
| model |
|
| modification_method |
Select the method used to insert your construct into the genome of |
| mono_2nd_xtal_mm |
Second crystal gap position in mm (Crystal_Gap) |
| mono_angle_deg |
Monochromator Bragg angle in degrees (Crystal_Phi) |
| mono_energy_encoder_ev |
Monochromator energy from independent encoder in eV |
| mono_energy_motor_ev |
Monochromator energy from motor encoder in eV |
| motor_index |
1-based motor index (aligns with Motor_N_Pos) |
| motor_name |
Motor name (e |
| motors |
Motor positions recorded at scan start |
| ms_raw_file_type |
the filetype of the mass spectrometry instrument data |
| muscovite_percent |
Muscovite (KAl2(AlSi3O10)(OH)2) weight percent |
| n |
Van Genuchten pore-size distribution index n (dimensionless, n > 1) |
| n_alkanes |
Concentration of n-alkanes; can include multiple n-alkanes (Unit: ug/mL) |
| n_data_points |
Number of data points included in the fit |
| n_data_rows |
Number of data rows in the file |
| n_points |
Number of scan points |
| n_standards |
Number of reference standards used in the linear combination |
| n_variables |
Number of free variables in the fit |
| name |
Human-readable name for the entity or activity |
| nb_mg_per_kg |
Niobium concentration in mg/kg |
| negative_absorbance_margin_au |
Spectrophotometer setting defining the allowed margin below zero |
| neon_domain |
Areas where ecosystems (and the type quality and quantity of environmental re... |
| neon_plot_id |
When sampling from a NEON site provide the plot ID from which you sampled |
| neon_site_code |
When sampling from a NEON site provide the 4 letter site code (Example: DEJU) |
| nh4_n_avg |
|
| nh4_n_id |
|
| ni_mg_per_kg |
Nickel concentration in mg/kg |
| nitrate |
Concentration of nitrate in the sample (Unit: umol/L or mg/L or ppm) |
| nitrite |
Concentration of nitrite in the sample (Unit: umol/L or mg/L or ppm) |
| nitro |
Concentration of nitrogen (total) (Unit: umol/L) |
| no3_n_avg |
|
| no3_n_id |
|
| noise_added |
Statistical noise added to data before fitting (0 if none) |
| non_microb_biomass |
Amount of biomass; should include the name for the part of biomass measured, ... |
| non_microb_biomass_method |
Reference or method used in determining biomass |
| non_min_nutr_regm |
Information about treatment involving the exposure of plant to non-mineral nu... |
| normalization_method |
The strategy used for normalization (equal mass, equal volume, etc |
| nucleotide_sequencing_category |
The category of nucleotide sequencing performed (e |
| number_of_injections |
|
| orcid |
ORCID identifier of the person |
| org_carb |
Concentration of organic carbon |
| org_matter |
Concentration of organic matter (Unit: mg/L) |
| org_nitro |
Concentration of organic nitrogen |
| org_nitro_method |
Method used for obtaining organic nitrogen |
| org_particles |
concentration of particles such as faeces, hairs, food, vomit, paper, fibers,... |
| organism_count |
Total cell count of any organism (or group of organisms) per gram volume or a... |
| organism_name |
Provide the scientific name (genus and species) of the host organism |
| organism_ref |
FK reference to an organism representing the biological identity |
| other |
Other/additional details about your sample that you feel can't be accurately ... |
| other_growth_facil |
Please specify growth facility if you selected 'other' |
| other_guid_source |
Description of GUID source if guid_source = "other" |
| other_properties |
Other important properties of the instrument that are not captured in other f... |
| other_samp_store_temp |
Please specify sample storage temperature if you selected 'other' |
| other_storage_condt |
Please specify your storage conditions if you selected 'other' and the availa... |
| other_treatment |
Many sample treatment descriptor columns are available |
| oxygen |
Amount of oxygen measured in the air the day of sampling |
| oxygen_relationship |
The relationship of the sample to oxygen, such as aerobic or anaerobic |
| oxygen_saturation_pct |
Percent saturation of oxygen in the incubation atmosphere (0–100) |
| packages |
|
| parent_workflow_id |
Self-referential FK to the preceding DataProcessingActivity in a chain |
| part_org_carb |
Concentration of particulate organic carbon |
| part_org_nitro |
Concentration of particulate organic nitrogen |
| particle_class |
Particles are classified based on their size into six general categories: cla... |
| path |
Optional debug string representing the full chain (e |
| pathogenicity |
To what is the entity pathogenic, e |
| pb_mg_per_kg |
Lead concentration in mg/kg |
| peak_area |
The area under the peak in a chromatogram or mass spectrum, which is proporti... |
| peak_height |
The height of the peak in a chromatogram or mass spectrum, which can be used ... |
| peak_percent_area |
The percentage of the total area that a specific peak represents in a chromat... |
| permeability_x_um2 |
Absolute permeability from pore network model in X direction (um^2) |
| permeability_y_um2 |
Absolute permeability from pore network model in Y direction (um^2) |
| permeability_z_um2 |
Absolute permeability from pore network model in Z direction (um^2) |
| person |
The person who contributed to the study |
| person_id |
|
| perturbation |
Type of perturbation, e |
| pesticide_regm |
Information about treatment involving use of insecticides; should include the... |
| petroleum_hydrocarb |
Concentration of petroleum hydrocarbon (Unit: umol/L) |
| ph |
pH measurement of the sample or liquid portion of sample or aqueous phase of ... |
| ph_adjustment |
Whether the entity was pH-adjusted |
| ph_meth |
Reference or method used in determining ph of the sample |
| ph_regm |
Information about treatment involving exposure of plants to varying levels of... |
| ph_target |
Target pH value (required if ph_adjustment is true) |
| phaeopigments |
Concentration of phaeopigments; can include multiple phaeopigments separated ... |
| phenotype |
Provide the intedned phenotype of hte modified organism |
| phosphate |
Concentration of phosphate (Unit: umol/L) |
| phosphorus_avg |
|
| phosphorus_id |
|
| phosplipid_fatt_acid |
Concentration of phospholipid fatty acids; can include multiple values separa... |
| photo_taken_during |
|
| photochemical_exposure |
This term is used to describe a chemical reaction caused by absorption of ult... |
| photon_flux |
Measurement of photon flux |
| plant_age |
Age of plant at the time of sampling |
| plant_common_name |
Common name of the plant |
| plant_disease_stat |
List of diseases with which the plant has been diagnosed; can include multipl... |
| plant_dry_mass |
Measurement of dry mass |
| plant_genotype |
Observed genotype of the plant |
| plant_growth_med |
Specification of the media for growing the plants or tissue cultured samples ... |
| plant_product |
Substance produced by the plant where the sample was obtained from |
| plant_sex |
Sex of the reproductive parts on the whole plant |
| plant_struc |
Name of plant structure the sample was obtained from; for Plant Ontology (PO)... |
| plant_taxid |
NCBI taxon ID of the plant from https://www |
| plant_wet_mass |
Measurement of wet mass |
| plate_average |
Mean measurement across all sample wells (excludes blanks) |
| plate_barcode |
Physical barcode on plate (if different from UUID) |
| plate_lot |
Manufacturer lot number for Biolog EcoPlate QC |
| plate_reader_model |
Instrument model used for reading (e |
| plate_type |
Vendor and model of plate (e |
| polarity |
Polarity setting used in the mass spectrometry method |
| pore_area_max_mm2 |
Maximum area of pores (mm^2) |
| pore_area_mean_mm2 |
Mean area of pores (mm^2) |
| pore_area_median_mm2 |
Median area of pores (mm^2) |
| pore_area_min_mm2 |
Minimum area of pores (mm^2) |
| pore_area_variance_mm4 |
Variance of area of pores (mm^4) |
| pore_connectivity_percent |
Percentage of connected pore volume to all pore volume (%) |
| pore_equivalent_diameter_max_mm |
Maximum equivalent pore diameter (mm) |
| pore_equivalent_diameter_mean_mm |
Mean equivalent pore diameter (mm) |
| pore_equivalent_diameter_median_mm |
Median equivalent pore diameter (mm) |
| pore_equivalent_diameter_min_mm |
Minimum equivalent pore diameter (mm) |
| pore_equivalent_diameter_variance_mm2 |
Variance of equivalent pore diameter (mm^2) |
| pore_volume_max_mm3 |
Maximum volume of pores (mm^3) |
| pore_volume_mean_mm3 |
Mean volume of pores (mm^3) |
| pore_volume_median_mm3 |
Median volume of pores (mm^3) |
| pore_volume_min_mm3 |
Minimum volume of pores (mm^3) |
| pore_volume_variance_mm6 |
Variance of volume of pores (mm^6) |
| porosity |
Porosity of deposited sediment is volume of voids divided by the total volume... |
| porosity_percent |
Percentage of total pore volume to total volume of ROI (%) |
| position |
Motor position value at scan start |
| positioner |
Primary positioner name (e |
| potassium |
Concentration of potassium in the sample (Unit: mg/L) |
| potassium_id |
|
| pre_treatment |
the process of pre-treatment removes materials that can be easily collected f... |
| preparation_date |
Date the stock culture or entity was prepared |
| pressure |
Pressure to which the sample is subject, in atmospheres (Unit: atm) |
| pressure_bar |
Gas fill pressure in bar |
| pressure_control |
Measurment of pressure applied to the sample during experimentation (Unit: Pa... |
| previous_land_use |
Previous land use and dates |
| previous_land_use_meth |
Reference or method used in determining previous land use and dates |
| primary_prod |
Measurement of primary production generally measured as isotope uptake |
| primary_treatment |
the process to produce both a generally homogeneous liquid capable of being t... |
| principal_investigator |
|
| priority_order |
Indicate the run order priority of your samples |
| processing_id |
|
| processing_institution |
The institution where the activity took place |
| produced_by_ms_run |
a reference to the data generation activity that produced instrument data |
| produced_by_ri_run |
a reference to the data generation activity that produced this measurement |
| produced_by_sequencing_activity |
Link back to the NucleotideSequencing activity that produced this data |
| produced_by_uv_run |
a reference to the data generation activity that produced this measurement |
| produced_by_xas_run |
Reference to the XAS data generation activity that produced this raw file |
| product_name |
Provide the name of the product used to create the synthetic material |
| production_method |
A DOI or description of how the compound was produced, if the commercially pu... |
| profile_image_url |
|
| profile_position |
Cross-sectional position in the hillslope where sample was collected |
| project |
Identifier for the user project associated with the entity or activity |
| project_end |
|
| project_id |
|
| project_start |
|
| project_status |
|
| propagation |
The type of reproduction from the parent stock |
| proportion |
Species proportion in sample (fraction 0-1) |
| proposal_abstract |
The abstract submitted with the research proposal |
| protein_assay_type |
The type of protein assay (Coomassie, BCA, etc |
| protocol_link |
A link to a protocol that describes the steps and parameters of the activity |
| protocol_url |
URL pointing to the protocol used in the activity, if applicable |
| protocol_version |
Version of the protocol used in the activity, if applicable |
| provider_name |
Provider class (e |
| purchased_material_type |
Discriminator for purchasedMaterial subtype (e |
| pv |
EPICS process variable name (e |
| pyrite_percent |
Pyrite (FeS2) weight percent |
| quartz_percent |
Quartz (SiO2) weight percent |
| r_factor |
R-factor goodness-of-fit statistic |
| radiation_regm |
Information about treatment involving exposure of plant or a plant part to a ... |
| rainfall_regm |
Information about treatment involving an exposure to a given amount of rainfa... |
| raw_fasta_url |
URL of raw FASTA file, if available from provider |
| rb_mg_per_kg |
Rubidium concentration in mg/kg |
| reactor_type |
anaerobic digesters can be designed and engineered to operate using a number ... |
| reagent_additions |
Per-well reagent additions beyond the base media |
| redox_potential |
Redox potential measured relative to a hydrogen cell indicating oxidation or ... |
| reduced_chi_square |
Reduced chi-square statistic |
| ref_biomaterial |
Primary publication if isolated before genome publication; otherwise primary ... |
| reference_material |
Reference standard material name |
| renderer |
UI renderer to use for this container type (e |
| replicate |
The replicate number of the sample or measurement, if applicable |
| replicate_bio |
The biological replicate number of the sample, if applicable |
| replicate_group |
Identifier linking technical replicates (e |
| replicate_number |
The replicate number of the sample, if applicable |
| replicate_tech |
The technical replicate number of the sample or measurement, if applicable |
| requested_concentration |
Target final concentration of this reagent in the well, as specified |
| residual |
Fit residual at this point (data_val - fit_val) |
| resolution |
|
| resolution_nm |
Spectral resolution of the detector, in nanometers |
| respiration_co2_c_ug_per_g |
Soil respiration expressed as µg CO₂-C per gram soil |
| results_from_ms_processing |
a reference to the mass spec data processing activity that produced this data... |
| results_from_xas_processing |
Reference to the XAS LCF processing activity that produced this processed pro... |
| retention_time_min |
Retention time of the analyte in the chromatography method, in minutes |
| ring_current_ma |
Storage ring current in mA at scan start |
| ring_energy_gev |
Storage ring energy in GeV |
| roi_x_voxel |
Number of voxels in X direction of ROI |
| roi_y_voxel |
Number of voxels in Y direction of ROI |
| roi_z_voxel |
Number of voxels in Z direction of ROI |
| role |
Whether sample_id was consumed by (input_sample) or produced by (output_sampl... |
| root_cond |
Relevant rooting conditions such as field plot size, sowing density, containe... |
| root_med_carbon |
Source of organic carbon in the culture rooting medium |
| root_med_macronutr |
Measurement of the culture rooting medium macronutrients (NP K Ca Mg S) |
| root_med_micronutr |
Measurement of the culture rooting medium micronutrients (Fe Mn Zn B Cu Mo) |
| root_med_ph |
pH measurement of the culture rooting medium |
| root_med_regl |
Growth regulators in the culture rooting medium such as cytokinins, auxins, g... |
| root_med_solid |
Specification of the solidifying agent in the culture rooting medium |
| root_med_suppl |
Organic supplements of the culture rooting medium such as vitamins, amino aci... |
| rotation |
|
| row_num |
1-based row index within the sweep file |
| row_val |
Representative value at this scan point |
| run_label |
Analysis run variant label extracted from filename |
| s3_base_url |
|
| s3_bucket |
|
| s3_key |
MinIO/S3 object key; required for all data products |
| salinity |
Salinity is the total concentration of all dissolved salts in a sample |
| salinity_method |
Method used to determine sample salinity |
| salt_regm |
Information about treatment involving use of salts as supplement to liquid an... |
| samp_capt_status |
Reason for the sample |
| samp_dis_stage |
Stage of the disease at the time of sample collection e |
| samp_store_temp |
The temperature at which your samples should be stored upon arrival |
| sample_collected |
This refers to the TOTAL amount of sample collected from the experiment |
| sample_collection_dev |
The device used to collect an environmental sample |
| sample_collection_method |
The method used to collect an environmental sample |
| sample_detector_distance_mm |
Sample-to-detector distance in mm |
| sample_doi |
DOI or persistent identifier for the sample |
| sample_end_time |
Time of when the sample collection ends |
| sample_format |
Physical sample format (e |
| sample_holder |
Holder/position identifier (e |
| sample_id |
Link back to the originating sample |
| sample_link |
'A unique identifier to assign parent-child subsample or sibling samples |
| sample_name |
The name or label that is present on the shipped sample |
| sample_nor_file |
Normalised spectrum filename recorded in the LCF header |
| sample_orientation_deg |
Sample orientation angle in degrees |
| sample_processing |
A brief description of any processing applied to the sample during or after r... |
| sample_processing_substance |
A substance that was used in the SampleProcessing activity |
| sample_start_time |
Time of when the sample collection starts |
| sample_temperature_k |
Sample temperature in Kelvin |
| sample_type |
Requires a standardized ontology term to describe what your sample is |
| sample_volume |
|
| sampled_at_site |
Reference to the site where the sample was collected |
| sampled_during |
Reference to the sampling activity during which this sample was collected |
| sampled_portion |
The portion of the original sample used in creating this processed sample (e |
| sampling_duration |
The difference between sample start and sample end time in seconds |
| sampling_rate_hz |
Rate at which data points are acquired during the run, in Hertz |
| sampling_set |
Sampling set number for grouping related samples collected together |
| sand_pct_id |
|
| sb_mg_per_kg |
Antimony concentration in mg/kg |
| scan_bounds |
Scan boundary string as written in file header |
| scan_datetime |
Date and time at scan start |
| scan_steps |
Step sizes string as written in file header |
| scan_subtype |
Scan type, energy (XAS) or motor (alignment) |
| scan_time_sec |
Total scan duration in seconds |
| se_mg_per_kg |
Selenium concentration in mg/kg |
| sealing_method |
How the plate is sealed (e |
| season_environment |
Treatment involving an exposure to a particular season (e |
| season_precpt |
The average of all seasonal precipitation values known or an estimated equiva... |
| season_temp |
Mean seasonal temperature (Unit: C) |
| second_blh |
Second boundary layer height candidate (meters) (Unit: m) |
| second_blh_quality |
Quality index for second boundary layer height candidate (-999 if no candidat... |
| second_cbh |
Second cloud base (meters) or highest received signal in vertical visibility ... |
| secondary_treatment |
the process for substantially degrading the biological content of the sewage |
| sediment_type |
Information about the sediment type based on major constituents |
| separation_method |
The method used to separate phases during the filtration process (e |
| sequence_order |
Integer ordering within a temporal series for the same analyte |
| serial_number |
instrument instance specifier |
| setup_date |
When the plate was physically set up |
| setup_instrument |
Automated liquid handler (e |
| setup_operator_id |
Person who set up the plate |
| sewage_type |
type of wastewater treatment plant as municipial or industrial |
| shipped_sample_size |
Total amount of sample sent to EMSL |
| sieving |
Collection design of pooled samples and/or sieve size and amount of sample si... |
| signal_columns |
Detector signal name / EPICS PV pairs |
| signal_name |
Signal channel name (e |
| silicate |
Concentration of silicate (Unit: umol/L) |
| silt_pct_id |
|
| site_photo_type |
|
| size_frac_low |
Refers to the mesh/pore size used to pre-filter/pre-sort the sample |
| size_frac_up |
Refers to the mesh/pore size used to retain the sample |
| slit_center_h |
Horizontal slit center position (mm) |
| slit_center_v |
Vertical slit center position (mm) |
| slit_size_h_um |
Horizontal slit size in microns |
| slit_size_v_um |
Vertical slit size in microns |
| slope_aspect |
The direction a slope faces |
| slope_gradient |
Commonly called 'slope' |
| slot_capacity |
|
| sludge_retent_time |
the time activated sludge remains in reactor |
| sn_mg_per_kg |
Tin concentration in mg/kg |
| sodium |
Sodium concentration in the sample (Unit: ug/mL) |
| sodium_id |
|
| software_poc |
|
| software_url |
|
| software_version |
|
| soil_horizon |
Specific layer in the land area which measures parallel to the soil surface a... |
| soil_sample_type |
The specific type of soil sample (e |
| soil_texture |
The relative proportion of different grain sizes of mineral particles in a so... |
| soil_type |
Soil series name or other lower-level classification |
| soil_type_meth |
Reference or method used in determining soil series name or other lower-level... |
| solar_irradiance |
Solar irradiance is the power per unit area (surface power density) received ... |
| soluble_inorg_mat |
concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hy... |
| soluble_org_mat |
concentration of substances such as urea, fruit sugars, soluble proteins, dru... |
| soluble_react_phosp |
Concentration of soluble reactive phosphorus |
| source_concentration_mg_per_ml |
Concentration of the substance before it is added to the experiment, in mill... |
| source_mat_id |
A unique identifier assigned to an original material sample collected or to a... |
| source_material |
|
| species_name |
Chemical species or oxidation state name from the LCF report |
| species_proportions |
Derived species proportion results (XANES only) |
| specific_host |
If there is a host involved please provide its taxid (or environmental if not... |
| sr_mg_per_kg |
Strontium concentration in mg/kg |
| standards |
Reference standards used in the linear combination fit |
| standing_water_regm |
Treatment involving an exposure to standing water during a plant's life span;... |
| start_date_inc |
Date the incubation was started |
| started_at_time |
|
| starting_mass_mg |
The mass of sample or analyte used in the first step of the process, in milli... |
| stationary_phase |
Description of the stationary phase used in the chromatography method (e |
| std_index |
1-based index of the reference standard in the fit |
| std_name |
Reference standard name as written in the Athena or Larch project |
| step_number |
Integer ordering within a multi-step process for the same analyte |
| sterilization_method |
Method used to sterilize the entity (autoclave, filter, UV, etc |
| stock_concentration |
Concentration of the stock solution from which this reagent was drawn |
| storage_condition |
The storage condition of the sample |
| storage_condition_other |
Free-text field for storage conditions when 'storage_condition' is 'other' |
| storage_location |
The physical or digital location where the processed sample is stored (e |
| storage_temperature |
Storage temperature for the sample (e |
| strain_description |
A brief description of the modifications that comprise this strain |
| strain_identifier |
External human-readable strain identifier (e |
| strain_mutation |
Primary genetic modification or plasmid carried (e |
| strain_name |
Provide a unique name to identify transformed strain lines |
| strain_ref |
FK reference to a Strain purchasedMaterial used in the activity |
| strain_source |
Indicate the source of the strain provided (e |
| strain_type |
Type of strain/organism (bacterial, fungal, archaeal, etc |
| subspecf_gen_lin |
Information about the genetic distinctness of the sequenced organism below th... |
| substance |
The chemical substance used in the mobile phase |
| substance_role |
Role of this reagent in the experiment (nutrient, normalizer, inducer, etc |
| substances_used |
A reference to substances used in a SampleProcessing activity |
| sulfate |
Concentration of sulfate in the sample |
| sulfate_id |
|
| sulfide |
Concentration of sulfide in the sample |
| summary_metrics |
Lightweight per-product summary for common queries that avoid full file downl... |
| suspend_part_matter |
Concentration of suspended particulate matter |
| suspend_solids |
concentration of substances including a wide variety of material such as silt... |
| sweep_number |
1-based sweep index within the measurement session |
| synth_env_assembly |
Describes how the synthetic environments parts are contained and assembled |
| synth_env_design |
The design of the synthetic environment that was created for experimentation |
| synth_env_design_method |
A citation for how the synthetic environment was designed |
| synth_env_material |
Describes the fabrication material used to create the synthetic environment a... |
| synth_env_treatment |
Describes any treatments that are built into the synthetic environment |
| synth_instrument |
The instrumentation used to synthesize the material sample |
| synth_process |
Provide the citation or describe the method of synthesis |
| synth_reagents |
The reagents used in the material synthesis |
| synth_start_date |
Provide the date the sample was transferred to the synthetic environment |
| target_mass_mg |
Target volume of analyte per sample after normalization, in milligrams, if a... |
| target_strain |
Target strain identifier for purity checks |
| target_vol_ul |
Target volume of analyte per sample after normalization, in microliters, if ... |
| taxonomy_id |
NCBI taxon ID for the organism |
| technical_reps |
Number of technical replicates for the sample |
| temp |
Temperature of the sample at the time of sampling |
| temperature_celsius |
Temperature at which the method/process/activity was performed |
| temperature_exposure |
The range of temperatures at which it is safe to store a label that has been ... |
| term |
|
| term_id |
pointer to an ontology class |
| tertiary_treatment |
the process providing a final treatment stage to raise the effluent quality b... |
| texture_meth |
Reference or method used in determining soil texture |
| th_mg_per_kg |
Thorium concentration in mg/kg |
| theta_r |
Residual volumetric water content theta_r (cm3 cm) |
| theta_s |
Saturated volumetric water content theta_s (cm3 cm e-3) |
| third_blh |
Third boundary layer height candidate (meters) (Unit: m) |
| third_blh_quality |
Quality index for third boundary layer height candidate (-999 if no candidate... |
| tidal_stage |
Stage of tide |
| tillage |
Note method(s) used for tilling |
| time |
|
| timepoint_label |
Human-readable timepoint label for repeated-measurement series |
| tiss_cult_growth_med |
Description of plant tissue culture growth media used |
| title |
The title of the study/proposal |
| tortuosity_x |
Tortuosity from pore network model in X direction (unitless) |
| tortuosity_y |
Tortuosity from pore network model in Y direction (unitless) |
| tortuosity_z |
Tortuosity from pore network model in Z direction (unitless) |
| tot_carb |
Total carbon content |
| tot_depth_water_col |
Measurement of total depth of water column (Unit: m) |
| tot_diss_nitro |
Total dissolved nitrogen concentration reported as nitrogen measured by: tota... |
| tot_inorg_nitro |
Total inorganic nitrogen content |
| tot_nitro |
Total nitrogen concentration of water samples calculated by: total nitrogen =... |
| tot_nitro_cont_meth |
Reference or method used in determining the total nitrogen |
| tot_nitro_content |
Total nitrogen content of the sample |
| tot_org_c_meth |
Reference or method used in determining total organic carbon |
| tot_org_carb |
Total organic carbon content |
| tot_part_carb |
Total particulate carbon content |
| tot_phosp |
Total phosphorus concentration in the sample calculated by: total phosphorus ... |
| tot_phosphate |
total amount or concentration of phosphate |
| total_amount_ug |
Total amount of analyte in micrograms |
| total_bases_id |
|
| total_carbon_id |
|
| total_kjeldahl_nitrogen_id |
|
| total_nitrogen_avg |
|
| total_nitrogen_id |
|
| total_organic_carbon_avg |
|
| total_organic_carbon_id |
|
| total_projections_collected |
|
| total_sulfur_id |
|
| trait |
Trait category for the organism |
| treatment |
Experimental treatment (e |
| treatment_concentration |
Treatment concentration with unit (e |
| treatment_type |
Type of treatment applied in experimental culture growth |
| trophic_level |
Trophic levels are the feeding position in a food chain |
| turbidity |
Measure of the amount of cloudiness or haziness in water caused by individual... |
| u_mg_per_kg |
Uranium concentration in mg/kg |
| uncertainty |
Uncertainty on the species proportion (fraction) |
| uninoculated_mean |
Mean measurement of uninoculated control wells (baseline for Ecoplate) |
| used_in_chromatography_config |
The chromatography configuration in which this mobile phase segment is used |
| user |
|
| user_comment |
Free-text user comment from scan header |
| uses_calibration |
Reference to the raw data file from the standard which was run with a batch o... |
| uses_chromatography |
Points to a record of the chromatography configuration used to separate analy... |
| uses_ms_configuration |
Points to a record of the configuration used for the mass spectrometry run |
| uses_raw_ms_data |
The raw data file, output by a mass spectrometer, that was analyzed in this ... |
| uses_raw_ri_data |
The raw data file, output by a RI detector, that was analyzed in this data pr... |
| uses_raw_uv_data |
The raw data file, output by a UV-Vis detector, that was analyzed in this dat... |
| uses_xas_raw_data |
Raw XAS instrument data inputs consumed by this LCF processing activity |
| uv_datagen_run |
Reference to the UV-Vis data generation activity that this channel configurat... |
| uv_detector_type |
Type of UV detector used in the chromatography method |
| v_mg_per_kg |
Vanadium concentration in mg/kg |
| value |
Measured value (absorbance, OD, fluorescence) |
| values |
|
| vendor |
|
| version |
String indicating the version of the software or protocol |
| volatile_org_comp |
Volatile organic compounds are organic chemicals that have a high vapour pres... |
| voltage_end |
Analog input voltage at scan end (V) |
| voltage_start |
Analog input voltage at scan start (V) |
| volume_ml |
Volume of the entity in milliliters |
| volume_ul |
Volume of the entity in microliters |
| voxel_size_mm_per_voxel |
Linear dimension of a voxel (mm/voxel) |
| wastewater_type |
the origin of wastewater such as human waste rainfall storm drains etc |
| water_content |
Water content measurement |
| water_content_meth |
Reference or method used in determining the water content of soil |
| water_current |
Measurement of magnitude and direction of flow within a fluid |
| water_temp_regm |
Information about treatment involving an exposure to water with varying degre... |
| watering_regm |
Information about treatment involving an exposure to watering frequencies, tr... |
| wavelength |
|
| wavelength_nm |
Measurement wavelength in nanometres (e |
| wavelength_nm_max |
Maximum wavelength of the detection range, in nanometers |
| wavelength_nm_min |
Minimum wavelength of the detection range, in nanometers |
| weather |
The state of the atmosphere at a given time and place with respect to variabl... |
| websites |
|
| weight |
Fitted weight (fraction) for this standard component |
| weight_percent |
Weight percent of the entity in the sample |
| weights_bounded |
Whether component weights were bounded between 0 and 1 |
| weights_sum |
Actual sum of fitted component weights |
| weights_sum_to_1 |
Whether component weights were constrained to sum to 1 |
| well_metadata |
Structured per-well metadata array |
| well_readings |
Structured per-well measurement data array |
| well_type |
Role of this well "sample", "blank", "uninoculated_control", "standard" |
| wind_direction |
Direction of the wind on the day of sampling |
| wind_speed |
Wind speed describes how fast the air is moving past a certain point during s... |
| within_17_oz |
Indicate if samples were collected during the local afternoon time |
| workflow_id |
|
| workflow_steps |
Per-run workflow parameters |
| x_first |
First positioner value in the scan (eV or mm) |
| x_last |
Last positioner value in the scan (eV or mm) |
| x_ray_power |
|
| x_val |
Positioner value at this data point (energy in eV or k in A^-1) |
| xas_filename |
Measurement filename stem linking LCF results to source XAS data |
| xas_sample_type |
Sample type descriptor (e |
| y_mg_per_kg |
Yttrium concentration in mg/kg |
| zinc_id |
|
| zn_mg_per_kg |
Zinc concentration in mg/kg |