Class: ControlledTermValue

URI: basalt_schema:ControlledTermValue

 classDiagram
    class ControlledTermValue
    click ControlledTermValue href "../ControlledTermValue/"
      ControlledTermValue : controlled_term_provider

      ControlledTermValue : description

      ControlledTermValue : has_raw_value

      ControlledTermValue : id

      ControlledTermValue : term

      ControlledTermValue : term_id

Slots

Name	Cardinality and Range	Description	Inheritance
description	0..1 String	Human-readable description for the entity or activity	direct
id	1 String		direct
has_raw_value	0..1 String		direct
term	0..1 String		direct
term_id	0..1 Uriorcurie	pointer to an ontology class	direct
controlled_term_provider	0..1 String	name of ontology or other controlled term provider	direct

Usages

used by	used in	type	used
MetagenomicsProduct	provider_name	range	ControlledTermValue
MetagenomicsAnnotationProduct	provider_name	range	ControlledTermValue
MetagenomicsBinningProduct	provider_name	range	ControlledTermValue
MetagenomicsGenePhylogenyProduct	provider_name	range	ControlledTermValue

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:ControlledTermValue
native	basalt_schema:ControlledTermValue

LinkML Source

Direct

name: ControlledTermValue
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
slots:
- description
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: string
    required: true
  has_raw_value:
    name: has_raw_value
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    domain_of:
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    - ConditioningValue
    range: string
  term:
    name: term
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    rank: 1000
    domain_of:
    - ControlledTermValue
    range: string
  term_id:
    name: term_id
    description: pointer to an ontology class
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    rank: 1000
    domain_of:
    - ControlledTermValue
    range: uriorcurie
  controlled_term_provider:
    name: controlled_term_provider
    description: name of ontology or other controlled term provider
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    rank: 1000
    domain_of:
    - ControlledTermValue
    range: string

Induced

name: ControlledTermValue
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    identifier: true
    alias: id
    owner: ControlledTermValue
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: string
    required: true
  has_raw_value:
    name: has_raw_value
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    alias: has_raw_value
    owner: ControlledTermValue
    domain_of:
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    - ConditioningValue
    range: string
  term:
    name: term
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    rank: 1000
    alias: term
    owner: ControlledTermValue
    domain_of:
    - ControlledTermValue
    range: string
  term_id:
    name: term_id
    description: pointer to an ontology class
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    rank: 1000
    alias: term_id
    owner: ControlledTermValue
    domain_of:
    - ControlledTermValue
    range: uriorcurie
  controlled_term_provider:
    name: controlled_term_provider
    description: name of ontology or other controlled term provider
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/value-tables
    rank: 1000
    alias: controlled_term_provider
    owner: ControlledTermValue
    domain_of:
    - ControlledTermValue
    range: string
  description:
    name: description
    description: Human-readable description for the entity or activity
    title: description
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: description
    owner: ControlledTermValue
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string