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Class: EcoplateWellMetadata

Ecoplate-specific per-well metadata.

Rich no media entity; carbon source and treatment are per-well

experimental design variables.

__

v1 origin: plate-general.yaml EcoplateWellMetadata

URI: basalt_schema:EcoplateWellMetadata

 classDiagram
    class EcoplateWellMetadata
    click EcoplateWellMetadata href "../EcoplateWellMetadata/"
      WellMetadata <|-- EcoplateWellMetadata
        click WellMetadata href "../WellMetadata/"

      EcoplateWellMetadata : carbon_source

      EcoplateWellMetadata : media_volume_ul

      EcoplateWellMetadata : position

      EcoplateWellMetadata : replicate_group

      EcoplateWellMetadata : treatment

      EcoplateWellMetadata : treatment_concentration

      EcoplateWellMetadata : well_type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
media_volume_ul 1
Float		 Volume of inoculum suspension added (microlitres) direct
carbon_source 1
String		 Carbon source in this well (e direct
treatment 0..1
String		 Experimental treatment (e direct
treatment_concentration 0..1
String		 Treatment concentration with unit (e direct
position 1
String		 Well position (e WellMetadata
well_type 0..1
String		 Role of this well "sample", "blank", "uninoculated_control", "standard" WellMetadata
replicate_group 0..1
String		 Identifier linking technical replicates (e WellMetadata

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self basalt_schema:EcoplateWellMetadata
native basalt_schema:EcoplateWellMetadata

LinkML Source

Direct

name: EcoplateWellMetadata
description: 'Ecoplate-specific per-well metadata.

  Rich   no media entity; carbon source and treatment are per-well

  experimental design variables.


  v1 origin: plate-general.yaml EcoplateWellMetadata'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
is_a: WellMetadata
attributes:
  media_volume_ul:
    name: media_volume_ul
    description: Volume of inoculum suspension added (microlitres)
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    domain_of:
    - AMP2WellMetadata
    - EcoplateWellMetadata
    range: float
    required: true
  carbon_source:
    name: carbon_source
    description: Carbon source in this well (e.g. "L-malic acid", "glucose")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    domain_of:
    - EcoplateWellMetadata
    range: string
    required: true
  treatment:
    name: treatment
    description: Experimental treatment (e.g. "control", "nickel_1pct")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    domain_of:
    - EcoplateWellMetadata
    range: string
  treatment_concentration:
    name: treatment_concentration
    description: Treatment concentration with unit (e.g. "1.0 pct", "10 mM")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    domain_of:
    - EcoplateWellMetadata
    range: string

Induced

name: EcoplateWellMetadata
description: 'Ecoplate-specific per-well metadata.

  Rich   no media entity; carbon source and treatment are per-well

  experimental design variables.


  v1 origin: plate-general.yaml EcoplateWellMetadata'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
is_a: WellMetadata
attributes:
  media_volume_ul:
    name: media_volume_ul
    description: Volume of inoculum suspension added (microlitres)
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    alias: media_volume_ul
    owner: EcoplateWellMetadata
    domain_of:
    - AMP2WellMetadata
    - EcoplateWellMetadata
    range: float
    required: true
  carbon_source:
    name: carbon_source
    description: Carbon source in this well (e.g. "L-malic acid", "glucose")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: carbon_source
    owner: EcoplateWellMetadata
    domain_of:
    - EcoplateWellMetadata
    range: string
    required: true
  treatment:
    name: treatment
    description: Experimental treatment (e.g. "control", "nickel_1pct")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: treatment
    owner: EcoplateWellMetadata
    domain_of:
    - EcoplateWellMetadata
    range: string
  treatment_concentration:
    name: treatment_concentration
    description: Treatment concentration with unit (e.g. "1.0 pct", "10 mM")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: treatment_concentration
    owner: EcoplateWellMetadata
    domain_of:
    - EcoplateWellMetadata
    range: string
  position:
    name: position
    description: Well position (e.g. "A01", "H12")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: position
    owner: EcoplateWellMetadata
    domain_of:
    - WellMetadata
    - WellReading
    range: string
    required: true
  well_type:
    name: well_type
    description: Role of this well   "sample", "blank", "uninoculated_control", "standard"
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: well_type
    owner: EcoplateWellMetadata
    domain_of:
    - WellMetadata
    range: string
  replicate_group:
    name: replicate_group
    description: Identifier linking technical replicates (e.g. "rep1", "rep2")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: replicate_group
    owner: EcoplateWellMetadata
    domain_of:
    - WellMetadata
    range: string