Class: UVSpectroscopyProduct

name: UVSpectroscopyProduct
description: "A compound and its measurements resulting from a \nUVDataGenerationActivity.One\
  \ UVDataGenerationActivity may have many \n\"products\" representing all compounds\
  \ detected in the sample."
from_schema: https://emsl-computing.github.io/BASALT-Schema
is_a: ProcessedData
slots:
- produced_by_uv_run
- compound_name
- retention_time_min
- peak_area
- peak_percent_area
- peak_height
- weight_percent
- concentration_ug_per_uL
- flag

name: UVSpectroscopyProduct
description: "A compound and its measurements resulting from a \nUVDataGenerationActivity.One\
  \ UVDataGenerationActivity may have many \n\"products\" representing all compounds\
  \ detected in the sample."
from_schema: https://emsl-computing.github.io/BASALT-Schema
is_a: ProcessedData
attributes:
  produced_by_uv_run:
    name: produced_by_uv_run
    description: a reference to the data generation activity that produced this measurement.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: produced_by_uv_run
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    range: UVDataGenerationActivity
  compound_name:
    name: compound_name
    description: The common name of the material. A substance formed by chemical union
      of two or more elements or ingredients in definite proportion by weight.
    title: compound name
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: compound_name
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    - RIProduct
    - CommerciallyPurchasedSample
    - OtherUndescribedSample
    - SynthesizedMaterialSample
    range: ChemicalEntityEnum
  retention_time_min:
    name: retention_time_min
    description: Retention time of the analyte in the chromatography method, in minutes.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: retention_time_min
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    range: float
  peak_area:
    name: peak_area
    description: The area under the peak in a chromatogram or mass spectrum, which
      is proportional to the amount of analyte present.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: peak_area
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    range: float
  peak_percent_area:
    name: peak_percent_area
    description: The percentage of the total area that a specific peak represents
      in a chromatogram or mass spectrum.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: peak_percent_area
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    range: float
  peak_height:
    name: peak_height
    description: The height of the peak in a chromatogram or mass spectrum, which
      can be used to assess the concentration of the analyte.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: peak_height
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    range: float
  weight_percent:
    name: weight_percent
    description: Weight percent of the entity in the sample
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: weight_percent
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    - RIProduct
    range: float
  concentration_ug_per_uL:
    name: concentration_ug_per_uL
    description: Concentration of the substance in micrograms per microliter.
    title: concentration (ug/uL)
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: concentration_ug_per_uL
    owner: UVSpectroscopyProduct
    domain_of:
    - UVSpectroscopyProduct
    - RIProduct
    - ProcessedSample
    range: float
  flag:
    name: flag
    description: A flag indicating the QC status of the data.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: flag
    owner: UVSpectroscopyProduct
    domain_of:
    - WellReading
    - BulkDensityProduct
    - EnzymeProduct
    - GWCMoistureProduct
    - HydraulicPropertiesProduct
    - PhosphorusAnalysisProduct
    - RespirationProduct
    - TextureProduct
    - pHProduct
    - UVSpectroscopyProduct
    - RIProduct
    range: ProcessedDataFlag
  summary_metrics:
    name: summary_metrics
    description: "Lightweight per-product summary for common queries that avoid full\
      \ file download.\nDirection: structured key-value pairs; per-type schemas TBD:\n\
      \  ecoplate:  well-level absorbance summaries (position, timepoint, absorbance)\n\
      \  xrf:       per-element concentration results + QC flag\n  lcms:      feature\
      \ count, identification count, MSI-2 fraction\nInterim DB storage: JSONB column\
      \ retained until formal typed class exists."
    todos:
    - make this inined/multivalued?
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: summary_metrics
    owner: UVSpectroscopyProduct
    domain_of:
    - ProcessedData
    range: string
    required: false
  lims_barcode:
    name: lims_barcode
    description: LIMS barcode identifier
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: lims_barcode
    owner: UVSpectroscopyProduct
    domain_of:
    - ProcessedData
    - Sample
    range: string
    required: false
  sample_id:
    name: sample_id
    description: Link back to the originating sample
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: sample_id
    owner: UVSpectroscopyProduct
    domain_of:
    - ProcessedData
    - ProcessingSampleLink
    - AMP2WellMetadata
    - MetagenomicsProduct
    range: Sample
    required: false
  name:
    name: name
    description: Human-readable name for the entity or activity.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: name
    owner: UVSpectroscopyProduct
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - Instrument
    - OntologyClass
    - ContainerAxis
    - SampleProcessing
    - Configuration
    - CalibrationStandardRun
    - PurchasedMaterial
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - SampleProcessingProtocol
    - SampleProcessingRun
    - Study
    - SoftwareControlledTermValue
    range: string
    required: true
  description:
    name: description
    description: Human-readable description for the entity or activity
    title: description
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: description
    owner: UVSpectroscopyProduct
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - SampleProcessing
    - Configuration
    - CalibrationStandardRun
    - PurchasedMaterial
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - SampleProcessingProtocol
    - SampleProcessingRun
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string
  project:
    name: project
    description: 'Identifier for the user project associated with the entity or activity. '
    title: Project
    todos:
    - should this be an ID? CURIE can use the one NMDC has https://bioregistry.io/reference/emsl.project:60141
      where emsl.project is the CURIE prefix
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    aliases:
    - study
    - study_id
    - project_id
    - proposal
    - proposal_id
    rank: 1000
    alias: project
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    - AerosolArmSample
    - AerosolSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - SamplingActivity
    range: integer
  sampling_set:
    name: sampling_set
    description: 'Sampling set number for grouping related samples collected together.

      This is a user-defined sequential integer that can be used to link samples collected

      in the same sampling event or campaign.'
    title: sampling set
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: sampling_set
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    - MonetSoilSample
    range: integer
  core_section:
    name: core_section
    description: The section of the core.
    title: core section
    examples:
    - value: TOP
    - value: MID
    - value: BTM
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: core_section
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    - CoreSection
    range: CoreSectionEnum
  sample_name:
    name: sample_name
    description: 'The name or label that is present on the shipped sample. This should

      be a human readable name.'
    title: sample name
    notes:
    - This is typically an alias for the inherited 'name' slot on Sample classes.
      Defined separately for compatibility with source data files using 'sample_name'
      column headers.
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    aliases:
    - samp_name
    rank: 1000
    alias: sample_name
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    - AerosolArmSample
    - AerosolSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    range: string
  s3_base_url:
    name: s3_base_url
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: s3_base_url
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    range: string
  s3_bucket:
    name: s3_bucket
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: s3_bucket
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    range: string
  s3_key:
    name: s3_key
    description: MinIO/S3 object key; required for all data products
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: s3_key
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    range: string
    required: true
  filesize:
    name: filesize
    description: Size of the file in bytes
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: filesize
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    range: integer
  md5checksum:
    name: md5checksum
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: md5checksum
    owner: UVSpectroscopyProduct
    domain_of:
    - DataProduct
    range: string
  id:
    name: id
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    identifier: true
    alias: id
    owner: UVSpectroscopyProduct
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MobilePhase
    - MobilePhaseSubstance
    - CalibrationStandardRun
    - PurchasedMaterial
    - MAOMProduct
    - WEOMProduct
    - organism
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - SampleProcessingProtocol
    - SampleProcessingRun
    - SubstancesUsedLink
    - SampleProcessingSubstance
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true