Slot: summary_metrics
Lightweight per-product summary for common queries that avoid full file download.
Direction: structured key-value pairs; per-type schemas TBD:
_ ecoplate: well-level absorbance summaries (position, timepoint, absorbance)_
_ xrf: per-element concentration results + QC flag_
_ lcms: feature count, identification count, MSI-2 fraction_
Interim DB storage: JSONB column retained until formal typed class exists.
URI: basalt_schema:summary_metrics Alias: summary_metrics
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MetagenomicsProduct | Abstract base for all metagenomics data products | no |
| ElementalAnalysisProduct | Elemental analysis product, typically derived via combustion or similar instr... | no |
| XRayDataProduct | Abstract base class for X-ray analytical data products | no |
| MetagenomicsBinningProduct | Top-level archive (zip/tar) for binning results stored in MinIO | no |
| ProcessedData | A data product generated by a workflow execution | no |
| RespirationProduct | Soil respiration analysis product | no |
| MetagenomicsAnnotationProduct | Top-level archive for functional annotation outputs (zip/tar stored in MinIO) | no |
| PHProduct | Soil pH analysis product, typically derived via pH meter or similar instrumen... | no |
| MSImageProduct | one or more image(s) output from a mass spec data processing workflow (eg | no |
| MetagenomicsGenePhylogenyProduct | Top-level archive for gene-based phylogeny outputs (zip/tar stored in MinIO) | no |
| MetaproteomicsProduct | A tabular data file containing peptide-level, protein-level, or aggregation r... | no |
| XRDPhaseProduct | X-ray Diffraction (XRD) mineral phase identification and quantification data | no |
| XASLCFProduct | XAS Linear Combination Fitting (LCF) processed result | no |
| RIProduct | A compound and its measurements resulting from a | no |
| IonsAnalysisProduct | Ions analysis product, typically derived via ICP-OES or similar instrument | no |
| MicrobialBiomassProduct | Microbial biomass analysis product, typically derived via chloroform fumigati... | no |
| EnzymeProduct | Enzyme activity analysis product, typically derived via colorimetric assay of... | no |
| BulkDensityProduct | Bulk density analysis product, typically derived via oven-drying and weighing... | no |
| XCTProduct | X-ray computed tomography (XCT) analysis product for pore geometry and flow p... | no |
| UVSpectroscopyProduct | A compound and its measurements resulting from a | no |
| MolecularIdentificationProduct | a file containing molecular formula identifications that was output from a ma... | no |
| PhosphorusAnalysisProduct | Phosphorus analysis product, typically derived via colorimetric assay of soil... | no |
| TextureProduct | Soil texture analysis product, typically derived via hydrometer or similar in... | no |
| GWCMoistureProduct | Gravimetric water content (GWC) analysis product, typically derived via oven-... | no |
| HydraulicPropertiesProduct | Soil hydraulic parameters derived from HYPROP evaporation-experiment data | no |
| XRFElementalProduct | X-ray Fluorescence (XRF) elemental concentration data | no |
| NitrogenAnalysisProduct | Nitrogen analysis product, typically derived via colorimetric assay of soil e... | no |
| MassSpectrometryDataProduct | Abstract base for all mass spectrometry data products | no |
Properties
Type and Range
| Property | Value |
|---|---|
| Range | String |
| Domain Of | ProcessedData |
Cardinality and Requirements
| Property | Value |
|---|---|
TODOs
- make this inined/multivalued?
Identifier and Mapping Information
Schema Source
- from schema: https://emsl-computing.github.io/BASALT-Schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | basalt_schema:summary_metrics |
| native | basalt_schema:summary_metrics |
LinkML Source
name: summary_metrics
description: "Lightweight per-product summary for common queries that avoid full file\
\ download.\nDirection: structured key-value pairs; per-type schemas TBD:\n ecoplate:\
\ well-level absorbance summaries (position, timepoint, absorbance)\n xrf: \
\ per-element concentration results + QC flag\n lcms: feature count, identification\
\ count, MSI-2 fraction\nInterim DB storage: JSONB column retained until formal\
\ typed class exists."
todos:
- make this inined/multivalued?
from_schema: https://emsl-computing.github.io/BASALT-Schema
rank: 1000
alias: summary_metrics
domain_of:
- ProcessedData
range: string
required: false