Class: IonsAnalysisProduct

Ions analysis product, typically derived via ICP-OES or similar instrument.

One row per sample with columns for each ion measured.

Individual QC flags for each ion using ProcessedDataFlag enum.

 classDiagram
    class IonsAnalysisProduct
    click IonsAnalysisProduct href "../IonsAnalysisProduct/"
      ProcessedData <|-- IonsAnalysisProduct
        click ProcessedData href "../ProcessedData/"

      IonsAnalysisProduct : boron_id





        IonsAnalysisProduct --> "0..1" QuantityValue : boron_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : calcium_id





        IonsAnalysisProduct --> "0..1" QuantityValue : calcium_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : cation_exchange_capacity_id





        IonsAnalysisProduct --> "0..1" QuantityValue : cation_exchange_capacity_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : copper_id





        IonsAnalysisProduct --> "0..1" QuantityValue : copper_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : core_section





        IonsAnalysisProduct --> "0..1" CoreSectionEnum : core_section
        click CoreSectionEnum href "../CoreSectionEnum/"



      IonsAnalysisProduct : description

      IonsAnalysisProduct : filesize

      IonsAnalysisProduct : flag_boron





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_boron
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_calcium





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_calcium
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_cec





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_cec
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_copper





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_copper
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_iron





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_iron
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_magnesium





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_magnesium
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_manganate





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_manganate
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_potassium





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_potassium
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_sodium





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_sodium
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_sulfate





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_sulfate
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_total_bases





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_total_bases
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : flag_zinc





        IonsAnalysisProduct --> "0..1" ProcessedDataFlag : flag_zinc
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      IonsAnalysisProduct : id

      IonsAnalysisProduct : iron_id





        IonsAnalysisProduct --> "0..1" QuantityValue : iron_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : lims_barcode

      IonsAnalysisProduct : magnesium_id





        IonsAnalysisProduct --> "0..1" QuantityValue : magnesium_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : manganate_id





        IonsAnalysisProduct --> "0..1" QuantityValue : manganate_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : md5checksum

      IonsAnalysisProduct : measure_type





        IonsAnalysisProduct --> "0..1" ProductMeasureType : measure_type
        click ProductMeasureType href "../ProductMeasureType/"



      IonsAnalysisProduct : name

      IonsAnalysisProduct : potassium_id





        IonsAnalysisProduct --> "0..1" QuantityValue : potassium_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : project

      IonsAnalysisProduct : s3_base_url

      IonsAnalysisProduct : s3_bucket

      IonsAnalysisProduct : s3_key

      IonsAnalysisProduct : sample_id





        IonsAnalysisProduct --> "0..1" Sample : sample_id
        click Sample href "../Sample/"



      IonsAnalysisProduct : sample_name

      IonsAnalysisProduct : sampling_set

      IonsAnalysisProduct : sodium_id





        IonsAnalysisProduct --> "0..1" QuantityValue : sodium_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : sulfate_id





        IonsAnalysisProduct --> "0..1" QuantityValue : sulfate_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : summary_metrics

      IonsAnalysisProduct : total_bases_id





        IonsAnalysisProduct --> "0..1" QuantityValue : total_bases_id
        click QuantityValue href "../QuantityValue/"



      IonsAnalysisProduct : zinc_id





        IonsAnalysisProduct --> "0..1" QuantityValue : zinc_id
        click QuantityValue href "../QuantityValue/"

Inheritance

DataProduct
- ProcessedData
  - IonsAnalysisProduct

Slots

Name	Cardinality and Range	Description	Inheritance
measure_type	0..1 ProductMeasureType	Whether the measurement recorded is a single measurement, one of a set of re...	direct
sulfate_id	0..1 QuantityValue		direct
boron_id	0..1 QuantityValue		direct
zinc_id	0..1 QuantityValue		direct
manganate_id	0..1 QuantityValue		direct
copper_id	0..1 QuantityValue		direct
iron_id	0..1 QuantityValue		direct
calcium_id	0..1 QuantityValue		direct
magnesium_id	0..1 QuantityValue		direct
sodium_id	0..1 QuantityValue		direct
potassium_id	0..1 QuantityValue		direct
total_bases_id	0..1 QuantityValue		direct
cation_exchange_capacity_id	0..1 QuantityValue		direct
flag_sulfate	0..1 ProcessedDataFlag		direct
flag_boron	0..1 ProcessedDataFlag		direct
flag_zinc	0..1 ProcessedDataFlag		direct
flag_manganate	0..1 ProcessedDataFlag		direct
flag_copper	0..1 ProcessedDataFlag		direct
flag_iron	0..1 ProcessedDataFlag		direct
flag_calcium	0..1 ProcessedDataFlag		direct
flag_magnesium	0..1 ProcessedDataFlag		direct
flag_sodium	0..1 ProcessedDataFlag		direct
flag_potassium	0..1 ProcessedDataFlag		direct
flag_total_bases	0..1 ProcessedDataFlag		direct
flag_cec	0..1 ProcessedDataFlag		direct
summary_metrics	0..1 String	Lightweight per-product summary for common queries that avoid full file downl...	ProcessedData
lims_barcode	0..1 String	LIMS barcode identifier	ProcessedData
sample_id	0..1 Sample	Link back to the originating sample	ProcessedData
name	1 String	Human-readable name for the entity or activity	DataProduct
description	0..1 String	Human-readable description for the entity or activity	DataProduct
project	0..1 Integer	Identifier for the user project associated with the entity or activity	DataProduct
sampling_set	0..1 Integer	Sampling set number for grouping related samples collected together	DataProduct
core_section	0..1 CoreSectionEnum	The section of the core	DataProduct
sample_name	0..1 String	The name or label that is present on the shipped sample	DataProduct
s3_base_url	0..1 String		DataProduct
s3_bucket	0..1 String		DataProduct
s3_key	1 String	MinIO/S3 object key; required for all data products	DataProduct
filesize	0..1 Integer	Size of the file in bytes	DataProduct
md5checksum	0..1 String		DataProduct
id	1 Uuid		DataProduct

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:IonsAnalysisProduct
native	basalt_schema:IonsAnalysisProduct

LinkML Source

Direct

name: IonsAnalysisProduct
description: 'Ions analysis product, typically derived via ICP-OES or similar instrument.

  One row per sample with columns for each ion measured.

  Individual QC flags for each ion using ProcessedDataFlag enum.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
is_a: ProcessedData
slots:
- measure_type
attributes:
  sulfate_id:
    name: sulfate_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  boron_id:
    name: boron_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  zinc_id:
    name: zinc_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  manganate_id:
    name: manganate_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  copper_id:
    name: copper_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  iron_id:
    name: iron_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  calcium_id:
    name: calcium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  magnesium_id:
    name: magnesium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  sodium_id:
    name: sodium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  potassium_id:
    name: potassium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  total_bases_id:
    name: total_bases_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  cation_exchange_capacity_id:
    name: cation_exchange_capacity_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  flag_sulfate:
    name: flag_sulfate
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_boron:
    name: flag_boron
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_zinc:
    name: flag_zinc
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_manganate:
    name: flag_manganate
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_copper:
    name: flag_copper
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_iron:
    name: flag_iron
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_calcium:
    name: flag_calcium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_magnesium:
    name: flag_magnesium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_sodium:
    name: flag_sodium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_potassium:
    name: flag_potassium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_total_bases:
    name: flag_total_bases
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_cec:
    name: flag_cec
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag

Induced

name: IonsAnalysisProduct
description: 'Ions analysis product, typically derived via ICP-OES or similar instrument.

  One row per sample with columns for each ion measured.

  Individual QC flags for each ion using ProcessedDataFlag enum.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
is_a: ProcessedData
attributes:
  sulfate_id:
    name: sulfate_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: sulfate_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  boron_id:
    name: boron_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: boron_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  zinc_id:
    name: zinc_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: zinc_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  manganate_id:
    name: manganate_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: manganate_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  copper_id:
    name: copper_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: copper_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  iron_id:
    name: iron_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: iron_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  calcium_id:
    name: calcium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: calcium_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  magnesium_id:
    name: magnesium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: magnesium_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  sodium_id:
    name: sodium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: sodium_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  potassium_id:
    name: potassium_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: potassium_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  total_bases_id:
    name: total_bases_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: total_bases_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  cation_exchange_capacity_id:
    name: cation_exchange_capacity_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: cation_exchange_capacity_id
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: QuantityValue
  flag_sulfate:
    name: flag_sulfate
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_sulfate
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_boron:
    name: flag_boron
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_boron
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_zinc:
    name: flag_zinc
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_zinc
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_manganate:
    name: flag_manganate
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_manganate
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_copper:
    name: flag_copper
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_copper
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_iron:
    name: flag_iron
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_iron
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_calcium:
    name: flag_calcium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_calcium
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_magnesium:
    name: flag_magnesium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_magnesium
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_sodium:
    name: flag_sodium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_sodium
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_potassium:
    name: flag_potassium
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_potassium
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_total_bases:
    name: flag_total_bases
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_total_bases
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  flag_cec:
    name: flag_cec
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    rank: 1000
    alias: flag_cec
    owner: IonsAnalysisProduct
    domain_of:
    - IonsAnalysisProduct
    range: ProcessedDataFlag
  measure_type:
    name: measure_type
    description: Whether the measurement recorded is a single measurement, one of
      a set of  replicate measurements, or an average of several replicate measurements.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: measure_type
    owner: IonsAnalysisProduct
    domain_of:
    - BulkDensityProduct
    - ElementalAnalysisProduct
    - EnzymeProduct
    - GWCMoistureProduct
    - HydraulicPropertiesProduct
    - IonsAnalysisProduct
    - MAOMProduct
    - MicrobialBiomassProduct
    - NitrogenAnalysisProduct
    - PhosphorusAnalysisProduct
    - RespirationProduct
    - TextureProduct
    - TomographyProduct
    - WEOMProduct
    - pHProduct
    - XRFElementalProduct
    - XRDPhaseProduct
    range: ProductMeasureType
  summary_metrics:
    name: summary_metrics
    description: "Lightweight per-product summary for common queries that avoid full\
      \ file download.\nDirection: structured key-value pairs; per-type schemas TBD:\n\
      \  ecoplate:  well-level absorbance summaries (position, timepoint, absorbance)\n\
      \  xrf:       per-element concentration results + QC flag\n  lcms:      feature\
      \ count, identification count, MSI-2 fraction\nInterim DB storage: JSONB column\
      \ retained until formal typed class exists."
    todos:
    - make this inined/multivalued?
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: summary_metrics
    owner: IonsAnalysisProduct
    domain_of:
    - ProcessedData
    range: string
    required: false
  lims_barcode:
    name: lims_barcode
    description: LIMS barcode identifier
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: lims_barcode
    owner: IonsAnalysisProduct
    domain_of:
    - ProcessedData
    - Sample
    range: string
    required: false
  sample_id:
    name: sample_id
    description: Link back to the originating sample
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: sample_id
    owner: IonsAnalysisProduct
    domain_of:
    - ProcessedData
    - AMP2WellMetadata
    - MetagenomicsProduct
    range: Sample
    required: false
  name:
    name: name
    description: Human-readable name for the entity or activity.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: name
    owner: IonsAnalysisProduct
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - Instrument
    - OntologyClass
    - ContainerAxis
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - SoftwareControlledTermValue
    range: string
    required: true
  description:
    name: description
    description: Human-readable description for the entity or activity
    title: description
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: description
    owner: IonsAnalysisProduct
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string
  project:
    name: project
    description: 'Identifier for the user project associated with the entity or activity. '
    title: Project
    todos:
    - should this be an ID? CURIE can use the one NMDC has https://bioregistry.io/reference/emsl.project:60141
      where emsl.project is the CURIE prefix
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    aliases:
    - study
    - study_id
    - project_id
    - proposal
    - proposal_id
    rank: 1000
    alias: project
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    - AerosolArmSample
    - AerosolSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - SamplingActivity
    range: integer
  sampling_set:
    name: sampling_set
    description: 'Sampling set number for grouping related samples collected together.

      This is a user-defined sequential integer that can be used to link samples collected

      in the same sampling event or campaign.'
    title: sampling set
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: sampling_set
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    - MonetSoilSample
    range: integer
  core_section:
    name: core_section
    description: The section of the core.
    title: core section
    examples:
    - value: TOP
    - value: MID
    - value: BTM
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: core_section
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    - CoreSection
    range: CoreSectionEnum
  sample_name:
    name: sample_name
    description: 'The name or label that is present on the shipped sample. This should

      be a human readable name.'
    title: sample name
    notes:
    - This is typically an alias for the inherited 'name' slot on Sample classes.
      Defined separately for compatibility with source data files using 'sample_name'
      column headers.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    aliases:
    - samp_name
    rank: 1000
    alias: sample_name
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    - AerosolArmSample
    - AerosolSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    range: string
  s3_base_url:
    name: s3_base_url
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: s3_base_url
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    range: string
  s3_bucket:
    name: s3_bucket
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: s3_bucket
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    range: string
  s3_key:
    name: s3_key
    description: MinIO/S3 object key; required for all data products
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: s3_key
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    range: string
    required: true
  filesize:
    name: filesize
    description: Size of the file in bytes
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: filesize
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    range: integer
  md5checksum:
    name: md5checksum
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: md5checksum
    owner: IonsAnalysisProduct
    domain_of:
    - DataProduct
    range: string
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    identifier: true
    alias: id
    owner: IonsAnalysisProduct
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true