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Enum: FileTypeEnum

URI: basalt_schema:FileTypeEnum

Permissible Values

Value Meaning Description
FT_ICR_MS_Analysis_Results None
GC_MS_Metabolomics_Results None
Metaproteomics_Workflow_Statistics None
Protein_Report None
Peptide_Report None
Unfiltered_Metaproteomics_Results None
Read_Count_and_RPKM None
QC_non_rRNA_R2 None
QC_non_rRNA_R1 None
Metagenome_Bins None
CheckM_Statistics None
GOTTCHA2_Krona_Plot None
Kraken2_Krona_Plot None
Centrifuge_Krona_Plot None
Kraken2_Classification_Report None
Kraken2_Taxonomic_Classification None
Centrifuge_Classification_Report None
Centrifuge_Taxonomic_Classification None
Structural_Annotation_GFF None
Functional_Annotation_GFF None
Annotation_Amino_Acid_FASTA None
Annotation_Enzyme_Commission None
Annotation_KEGG_Orthology None
Assembly_Coverage_BAM None
Assembly_AGP None
Assembly_Scaffolds None
Assembly_Contigs None
Assembly_Coverage_Stats None
Filtered_Sequencing_Reads None
QC_Statistics None
TIGRFam_Annotation_GFF None
Clusters_of_Orthologous_Groups_COG_Annotation_GFF None
CATH_FunFams_Functional_Families_Annotation_GFF None
SUPERFam_Annotation_GFF None
SMART_Annotation_GFF None
Pfam_Annotation_GFF None
Direct_Infusion_FT_ICR_MS_Raw_Data None

Slots

Name Description
file_type

Identifier and Mapping Information

Schema Source

LinkML Source

name: FileTypeEnum
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
rank: 1000
permissible_values:
  FT_ICR_MS_Analysis_Results:
    text: FT_ICR_MS_Analysis_Results
  GC_MS_Metabolomics_Results:
    text: GC_MS_Metabolomics_Results
  Metaproteomics_Workflow_Statistics:
    text: Metaproteomics_Workflow_Statistics
  Protein_Report:
    text: Protein_Report
  Peptide_Report:
    text: Peptide_Report
  Unfiltered_Metaproteomics_Results:
    text: Unfiltered_Metaproteomics_Results
  Read_Count_and_RPKM:
    text: Read_Count_and_RPKM
  QC_non_rRNA_R2:
    text: QC_non_rRNA_R2
  QC_non_rRNA_R1:
    text: QC_non_rRNA_R1
  Metagenome_Bins:
    text: Metagenome_Bins
  CheckM_Statistics:
    text: CheckM_Statistics
  GOTTCHA2_Krona_Plot:
    text: GOTTCHA2_Krona_Plot
  Kraken2_Krona_Plot:
    text: Kraken2_Krona_Plot
  Centrifuge_Krona_Plot:
    text: Centrifuge_Krona_Plot
  Kraken2_Classification_Report:
    text: Kraken2_Classification_Report
  Kraken2_Taxonomic_Classification:
    text: Kraken2_Taxonomic_Classification
  Centrifuge_Classification_Report:
    text: Centrifuge_Classification_Report
  Centrifuge_Taxonomic_Classification:
    text: Centrifuge_Taxonomic_Classification
  Structural_Annotation_GFF:
    text: Structural_Annotation_GFF
  Functional_Annotation_GFF:
    text: Functional_Annotation_GFF
  Annotation_Amino_Acid_FASTA:
    text: Annotation_Amino_Acid_FASTA
  Annotation_Enzyme_Commission:
    text: Annotation_Enzyme_Commission
  Annotation_KEGG_Orthology:
    text: Annotation_KEGG_Orthology
  Assembly_Coverage_BAM:
    text: Assembly_Coverage_BAM
  Assembly_AGP:
    text: Assembly_AGP
  Assembly_Scaffolds:
    text: Assembly_Scaffolds
  Assembly_Contigs:
    text: Assembly_Contigs
  Assembly_Coverage_Stats:
    text: Assembly_Coverage_Stats
  Filtered_Sequencing_Reads:
    text: Filtered_Sequencing_Reads
  QC_Statistics:
    text: QC_Statistics
  TIGRFam_Annotation_GFF:
    text: TIGRFam_Annotation_GFF
  Clusters_of_Orthologous_Groups_COG_Annotation_GFF:
    text: Clusters_of_Orthologous_Groups_COG_Annotation_GFF
  CATH_FunFams_Functional_Families_Annotation_GFF:
    text: CATH_FunFams_Functional_Families_Annotation_GFF
  SUPERFam_Annotation_GFF:
    text: SUPERFam_Annotation_GFF
  SMART_Annotation_GFF:
    text: SMART_Annotation_GFF
  Pfam_Annotation_GFF:
    text: Pfam_Annotation_GFF
  Direct_Infusion_FT_ICR_MS_Raw_Data:
    text: Direct_Infusion_FT_ICR_MS_Raw_Data