Class: Study

A study or research project, typically associated with a proposal and a set of experiments.

A study may have multiple participants, each with different roles, and may be associated with

one or more campaigns. The study may also have associated DOIs and funding sources.

 classDiagram
    class Study
    click Study href "../Study/"
      Study : associated_dois





        Study --> "*" DOI : associated_dois
        click DOI href "../DOI/"



      Study : collaborating_institution

      Study : description

      Study : external_identifiers

      Study : funding_sources





        Study --> "*" DOI : funding_sources
        click DOI href "../DOI/"



      Study : has_participants





        Study --> "*" ProjectParticipant : has_participants
        click ProjectParticipant href "../ProjectParticipant/"



      Study : id

      Study : name

      Study : principal_investigator





        Study --> "1" PersonValue : principal_investigator
        click PersonValue href "../PersonValue/"



      Study : project_end

      Study : project_id

      Study : project_start

      Study : project_status





        Study --> "0..1" ProjectStatusEnum : project_status
        click ProjectStatusEnum href "../ProjectStatusEnum/"



      Study : proposal_abstract

      Study : title

Slots

Name	Cardinality and Range	Description	Inheritance
external_identifiers	* Uriorcurie	List of project- or study-level identifiers (e	direct
id	1 Uuid		direct
project_id	1 Integer		direct
title	0..1 String	The title of the study/proposal	direct
name	1 String	Short name or code for the study	direct
proposal_abstract	0..1 String	The abstract submitted with the research proposal	direct
description	0..1 String	study objectives and scope	direct
has_participants	* ProjectParticipant	Links to a record of a person and their roles for this study	direct
principal_investigator	1 PersonValue		direct
collaborating_institution	0..1 String		direct
project_status	0..1 ProjectStatusEnum		direct
project_start	0..1 Datetime		direct
project_end	0..1 Datetime		direct
associated_dois	* DOI	A list of DOIs associated with this study	direct
funding_sources	* DOI		direct

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:Study
native	basalt_schema:Study

LinkML Source

Direct

name: Study
description: 'A study or research project, typically associated with a proposal and
  a set of experiments.

  A study may have multiple participants, each with different roles, and may be associated
  with

  one or more campaigns. The study may also have associated DOIs and funding sources.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
slots:
- external_identifiers
slot_usage:
  external_identifiers:
    name: external_identifiers
    description: List of project- or study-level identifiers (e.g., GOLD study ID)
      representing this project.
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  project_id:
    name: project_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: integer
    required: true
  title:
    name: title
    description: The title of the study/proposal.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: string
  name:
    name: name
    description: Short name or code for the study.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - Instrument
    - OntologyClass
    - ContainerAxis
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - SoftwareControlledTermValue
    range: string
    required: true
  proposal_abstract:
    name: proposal_abstract
    description: The abstract submitted with the research proposal.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: string
  description:
    name: description
    description: study objectives and scope
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string
  has_participants:
    name: has_participants
    description: Links to a record of a person and their roles for this study.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: ProjectParticipant
    multivalued: true
  principal_investigator:
    name: principal_investigator
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: PersonValue
    required: true
  collaborating_institution:
    name: collaborating_institution
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: string
  project_status:
    name: project_status
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: ProjectStatusEnum
  project_start:
    name: project_start
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: datetime
  project_end:
    name: project_end
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: datetime
  associated_dois:
    name: associated_dois
    description: A list of DOIs associated with this study
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: DOI
    multivalued: true
  funding_sources:
    name: funding_sources
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    domain_of:
    - Study
    range: DOI
    multivalued: true

Induced

name: Study
description: 'A study or research project, typically associated with a proposal and
  a set of experiments.

  A study may have multiple participants, each with different roles, and may be associated
  with

  one or more campaigns. The study may also have associated DOIs and funding sources.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
slot_usage:
  external_identifiers:
    name: external_identifiers
    description: List of project- or study-level identifiers (e.g., GOLD study ID)
      representing this project.
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    identifier: true
    alias: id
    owner: Study
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  project_id:
    name: project_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: project_id
    owner: Study
    domain_of:
    - Study
    range: integer
    required: true
  title:
    name: title
    description: The title of the study/proposal.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: title
    owner: Study
    domain_of:
    - Study
    range: string
  name:
    name: name
    description: Short name or code for the study.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    alias: name
    owner: Study
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - Instrument
    - OntologyClass
    - ContainerAxis
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - SoftwareControlledTermValue
    range: string
    required: true
  proposal_abstract:
    name: proposal_abstract
    description: The abstract submitted with the research proposal.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: proposal_abstract
    owner: Study
    domain_of:
    - Study
    range: string
  description:
    name: description
    description: study objectives and scope
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    alias: description
    owner: Study
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string
  has_participants:
    name: has_participants
    description: Links to a record of a person and their roles for this study.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: has_participants
    owner: Study
    domain_of:
    - Study
    range: ProjectParticipant
    multivalued: true
  principal_investigator:
    name: principal_investigator
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: principal_investigator
    owner: Study
    domain_of:
    - Study
    range: PersonValue
    required: true
  collaborating_institution:
    name: collaborating_institution
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: collaborating_institution
    owner: Study
    domain_of:
    - Study
    range: string
  project_status:
    name: project_status
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: project_status
    owner: Study
    domain_of:
    - Study
    range: ProjectStatusEnum
  project_start:
    name: project_start
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: project_start
    owner: Study
    domain_of:
    - Study
    range: datetime
  project_end:
    name: project_end
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: project_end
    owner: Study
    domain_of:
    - Study
    range: datetime
  associated_dois:
    name: associated_dois
    description: A list of DOIs associated with this study
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: associated_dois
    owner: Study
    domain_of:
    - Study
    range: DOI
    multivalued: true
  funding_sources:
    name: funding_sources
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/study
    rank: 1000
    alias: funding_sources
    owner: Study
    domain_of:
    - Study
    range: DOI
    multivalued: true
  external_identifiers:
    name: external_identifiers
    description: List of project- or study-level identifiers (e.g., GOLD study ID)
      representing this project.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: external_identifiers
    owner: Study
    domain_of:
    - NucleotideSequencing
    - AerosolArmSample
    - AerosolSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - Study
    range: uriorcurie
    multivalued: true