Skip to content

Slot: organism count (organism_count)

Total cell count of any organism (or group of organisms) per gram volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR atp mpn etc.) should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)

URI: basalt_schema:organism_count Alias: organism_count

Applicable Classes

Name Description Modifies Slot
OtherUndescribedSample A sample that does not fit into any of the other described sample types no

Properties

Type and Range

Property Value
Range String
Domain Of OtherUndescribedSample

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self basalt_schema:organism_count
native basalt_schema:organism_count

LinkML Source

name: organism_count
description: 'Total cell count of any organism (or group of organisms) per gram volume
  or area of sample, should include name of organism followed by count. The method
  that was used for the enumeration (e.g. qPCR atp mpn etc.) should also be provided.
  (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
rank: 1000
alias: organism_count
domain_of:
- OtherUndescribedSample
range: string