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Class: ContainerType

URI: basalt_schema:ContainerType

 classDiagram
    class ContainerType
    click ContainerType href "../ContainerType/"
      ContainerType : axes





        ContainerType --> "*" ContainerAxis : axes
        click ContainerAxis href "../ContainerAxis/"



      ContainerType : container_size_id





        ContainerType --> "0..1" QuantityValue : container_size_id
        click QuantityValue href "../QuantityValue/"



      ContainerType : container_type





        ContainerType --> "0..1" ContainerTypeEnum : container_type
        click ContainerTypeEnum href "../ContainerTypeEnum/"



      ContainerType : contains

      ContainerType : description

      ContainerType : id

      ContainerType : label_format

      ContainerType : renderer

      ContainerType : slot_capacity

Slots

Name Cardinality and Range Description Inheritance
id 1
Uuid		 direct
description 0..1
String		 direct
container_type 0..1
ContainerTypeEnum		 direct
container_size_id 0..1
QuantityValue		 direct
axes *
ContainerAxis		 direct
contains *
Uriorcurie		 direct
label_format 0..1
String		 direct
renderer 0..1
String		 UI renderer to use for this container type (e direct
slot_capacity 0..1
String		 direct

TODOs

  • reconcile with enums and in media_strain_culture_plate.yaml
  • potentially delete along with ContainerAxis? What are these for?

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self basalt_schema:ContainerType
native basalt_schema:ContainerType

LinkML Source

Direct

name: ContainerType
todos:
- reconcile with enums and in media_strain_culture_plate.yaml
- potentially delete along with ContainerAxis? What are these for?
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  description:
    name: description
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string
  container_type:
    name: container_type
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    domain_of:
    - ContainerType
    - CultureGrowth
    range: ContainerTypeEnum
  container_size_id:
    name: container_size_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ContainerType
    range: QuantityValue
  axes:
    name: axes
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ContainerType
    range: ContainerAxis
    multivalued: true
  contains:
    name: contains
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ContainerType
    range: uriorcurie
    multivalued: true
  label_format:
    name: label_format
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ContainerType
    range: string
  renderer:
    name: renderer
    description: UI renderer to use for this container type (e.g., defaultcontainer.js).
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ContainerType
    range: string
  slot_capacity:
    name: slot_capacity
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ContainerType
    range: string

Induced

name: ContainerType
todos:
- reconcile with enums and in media_strain_culture_plate.yaml
- potentially delete along with ContainerAxis? What are these for?
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    identifier: true
    alias: id
    owner: ContainerType
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  description:
    name: description
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    alias: description
    owner: ContainerType
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string
  container_type:
    name: container_type
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    alias: container_type
    owner: ContainerType
    domain_of:
    - ContainerType
    - CultureGrowth
    range: ContainerTypeEnum
  container_size_id:
    name: container_size_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: container_size_id
    owner: ContainerType
    domain_of:
    - ContainerType
    range: QuantityValue
  axes:
    name: axes
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: axes
    owner: ContainerType
    domain_of:
    - ContainerType
    range: ContainerAxis
    multivalued: true
  contains:
    name: contains
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: contains
    owner: ContainerType
    domain_of:
    - ContainerType
    range: uriorcurie
    multivalued: true
  label_format:
    name: label_format
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: label_format
    owner: ContainerType
    domain_of:
    - ContainerType
    range: string
  renderer:
    name: renderer
    description: UI renderer to use for this container type (e.g., defaultcontainer.js).
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: renderer
    owner: ContainerType
    domain_of:
    - ContainerType
    range: string
  slot_capacity:
    name: slot_capacity
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: slot_capacity
    owner: ContainerType
    domain_of:
    - ContainerType
    range: string