Class: WEOMProduct

Water Extractable Organic Matter (WEOM) analysis product, typically derived via Shimadzu TOC-L or similar instrument.

One row per sample with columns for total organic carbon and total nitrogen.

Individual QC flags for each measurement using ProcessedDataFlag enum.

 classDiagram
    class WEOMProduct
    click WEOMProduct href "../WEOMProduct/"
      WEOMProduct : flag_tn





        WEOMProduct --> "0..1" ProcessedDataFlag : flag_tn
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      WEOMProduct : flag_tn_avg





        WEOMProduct --> "0..1" ProcessedDataFlag : flag_tn_avg
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      WEOMProduct : flag_toc





        WEOMProduct --> "0..1" ProcessedDataFlag : flag_toc
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      WEOMProduct : flag_toc_avg





        WEOMProduct --> "0..1" ProcessedDataFlag : flag_toc_avg
        click ProcessedDataFlag href "../ProcessedDataFlag/"



      WEOMProduct : id





        WEOMProduct --> "1" ProcessedData : id
        click ProcessedData href "../ProcessedData/"



      WEOMProduct : measure_type





        WEOMProduct --> "0..1" ProductMeasureType : measure_type
        click ProductMeasureType href "../ProductMeasureType/"



      WEOMProduct : replicate

      WEOMProduct : total_nitrogen_avg

      WEOMProduct : total_nitrogen_id





        WEOMProduct --> "0..1" QuantityValue : total_nitrogen_id
        click QuantityValue href "../QuantityValue/"



      WEOMProduct : total_organic_carbon_avg

      WEOMProduct : total_organic_carbon_id





        WEOMProduct --> "0..1" QuantityValue : total_organic_carbon_id
        click QuantityValue href "../QuantityValue/"

Slots

Name	Cardinality and Range	Description	Inheritance
measure_type	0..1 ProductMeasureType	Whether the measurement recorded is a single measurement, one of a set of re...	direct
replicate	0..1 Integer	The replicate number of the sample or measurement, if applicable	direct
id	1 ProcessedData		direct
total_organic_carbon_id	0..1 QuantityValue		direct
total_organic_carbon_avg	0..1 Double		direct
total_nitrogen_id	0..1 QuantityValue		direct
total_nitrogen_avg	0..1 Double		direct
flag_toc	0..1 ProcessedDataFlag		direct
flag_tn	0..1 ProcessedDataFlag		direct
flag_toc_avg	0..1 ProcessedDataFlag		direct
flag_tn_avg	0..1 ProcessedDataFlag		direct

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:WEOMProduct
native	basalt_schema:WEOMProduct

LinkML Source

Direct

name: WEOMProduct
description: 'Water Extractable Organic Matter (WEOM) analysis product, typically
  derived via Shimadzu TOC-L or similar instrument.

  One row per sample with columns for total organic carbon and total nitrogen.

  Individual QC flags for each measurement using ProcessedDataFlag enum.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
slots:
- measure_type
- replicate
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: ProcessedData
    required: true
  total_organic_carbon_id:
    name: total_organic_carbon_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: QuantityValue
  total_organic_carbon_avg:
    name: total_organic_carbon_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: double
  total_nitrogen_id:
    name: total_nitrogen_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - ElementalAnalysisProduct
    - MAOMProduct
    - WEOMProduct
    range: QuantityValue
  total_nitrogen_avg:
    name: total_nitrogen_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: double
  flag_toc:
    name: flag_toc
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag
  flag_tn:
    name: flag_tn
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag
  flag_toc_avg:
    name: flag_toc_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag
  flag_tn_avg:
    name: flag_tn_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag

Induced

name: WEOMProduct
description: 'Water Extractable Organic Matter (WEOM) analysis product, typically
  derived via Shimadzu TOC-L or similar instrument.

  One row per sample with columns for total organic carbon and total nitrogen.

  Individual QC flags for each measurement using ProcessedDataFlag enum.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    identifier: true
    alias: id
    owner: WEOMProduct
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: ProcessedData
    required: true
  total_organic_carbon_id:
    name: total_organic_carbon_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: total_organic_carbon_id
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: QuantityValue
  total_organic_carbon_avg:
    name: total_organic_carbon_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: total_organic_carbon_avg
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: double
  total_nitrogen_id:
    name: total_nitrogen_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: total_nitrogen_id
    owner: WEOMProduct
    domain_of:
    - ElementalAnalysisProduct
    - MAOMProduct
    - WEOMProduct
    range: QuantityValue
  total_nitrogen_avg:
    name: total_nitrogen_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: total_nitrogen_avg
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: double
  flag_toc:
    name: flag_toc
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: flag_toc
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag
  flag_tn:
    name: flag_tn
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: flag_tn
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag
  flag_toc_avg:
    name: flag_toc_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: flag_toc_avg
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag
  flag_tn_avg:
    name: flag_tn_avg
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/products
    alias: flag_tn_avg
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - WEOMProduct
    range: ProcessedDataFlag
  measure_type:
    name: measure_type
    description: Whether the measurement recorded is a single measurement, one of
      a set of  replicate measurements, or an average of several replicate measurements.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: measure_type
    owner: WEOMProduct
    domain_of:
    - BulkDensityProduct
    - ElementalAnalysisProduct
    - EnzymeProduct
    - GWCMoistureProduct
    - HydraulicPropertiesProduct
    - IonsAnalysisProduct
    - MAOMProduct
    - MicrobialBiomassProduct
    - NitrogenAnalysisProduct
    - PhosphorusAnalysisProduct
    - RespirationProduct
    - TextureProduct
    - TomographyProduct
    - WEOMProduct
    - pHProduct
    - XRFElementalProduct
    - XRDPhaseProduct
    range: ProductMeasureType
  replicate:
    name: replicate
    description: The replicate number of the sample or measurement, if applicable.
    todos:
    - reconcile replicate modelling
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: replicate
    owner: WEOMProduct
    domain_of:
    - MAOMProduct
    - MicrobialBiomassProduct
    - NitrogenAnalysisProduct
    - PhosphorusAnalysisProduct
    - WEOMProduct
    - ProcessedSample
    range: integer