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Class: MobilePhaseSegment

A segment of the mobile phase sequence used in a chromatographic separation.

URI: basalt_schema:MobilePhaseSegment

 classDiagram
    class MobilePhaseSegment
    click MobilePhaseSegment href "../MobilePhaseSegment/"
      MobilePhaseSegment : duration_min

      MobilePhaseSegment : flow_rate_ul_min

      MobilePhaseSegment : id

      MobilePhaseSegment : mobile_phase





        MobilePhaseSegment --> "0..1" MobilePhase : mobile_phase
        click MobilePhase href "../MobilePhase/"



      MobilePhaseSegment : mobile_phase_percentage

      MobilePhaseSegment : step_number

      MobilePhaseSegment : used_in_chromatography_config





        MobilePhaseSegment --> "0..1" ChromatographyConfiguration : used_in_chromatography_config
        click ChromatographyConfiguration href "../ChromatographyConfiguration/"

Slots

Name Cardinality and Range Description Inheritance
duration_min 0..1
Float		 how long something took, in minutes direct
mobile_phase 0..1
MobilePhase		 Description of a mobile phase used in a chromatography method (e direct
flow_rate_ul_min 0..1
Float		 Flow rate of the mobile phase, in microliters per minute direct
step_number 0..1
Integer		 Integer ordering within a multi-step process for the same analyte direct
id 1
Uuid		 direct
mobile_phase_percentage 0..1
Float		 The proportion of the mobile phase segment in the overall mobile phase sequen... direct
used_in_chromatography_config 0..1
ChromatographyConfiguration		 The chromatography configuration in which this mobile phase segment is used direct

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self basalt_schema:MobilePhaseSegment
native basalt_schema:MobilePhaseSegment

LinkML Source

Direct

name: MobilePhaseSegment
description: A segment of the mobile phase sequence used in a chromatographic separation.
from_schema: https://emsl-computing.github.io/BASALT-Schema
slots:
- duration_min
- mobile_phase
- flow_rate_ul_min
- step_number
attributes:
  id:
    name: id
    from_schema: https://emsl-computing.github.io/BASALT-Schema/mass-spec
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MobilePhase
    - MobilePhaseSubstance
    - CalibrationStandardRun
    - PurchasedMaterial
    - MAOMProduct
    - WEOMProduct
    - organism
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - SampleProcessingProtocol
    - SampleProcessingRun
    - SubstancesUsedLink
    - SampleProcessingSubstance
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  mobile_phase_percentage:
    name: mobile_phase_percentage
    description: The proportion of the mobile phase segment in the overall mobile
      phase sequence, expressed as a percentage.
    from_schema: https://emsl-computing.github.io/BASALT-Schema/mass-spec
    rank: 1000
    domain_of:
    - MobilePhaseSegment
    range: float
  used_in_chromatography_config:
    name: used_in_chromatography_config
    description: The chromatography configuration in which this mobile phase segment
      is used.
    from_schema: https://emsl-computing.github.io/BASALT-Schema/mass-spec
    rank: 1000
    domain_of:
    - MobilePhaseSegment
    range: ChromatographyConfiguration

Induced

name: MobilePhaseSegment
description: A segment of the mobile phase sequence used in a chromatographic separation.
from_schema: https://emsl-computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://emsl-computing.github.io/BASALT-Schema/mass-spec
    identifier: true
    alias: id
    owner: MobilePhaseSegment
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MobilePhase
    - MobilePhaseSubstance
    - CalibrationStandardRun
    - PurchasedMaterial
    - MAOMProduct
    - WEOMProduct
    - organism
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - SampleProcessingProtocol
    - SampleProcessingRun
    - SubstancesUsedLink
    - SampleProcessingSubstance
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  mobile_phase_percentage:
    name: mobile_phase_percentage
    description: The proportion of the mobile phase segment in the overall mobile
      phase sequence, expressed as a percentage.
    from_schema: https://emsl-computing.github.io/BASALT-Schema/mass-spec
    rank: 1000
    alias: mobile_phase_percentage
    owner: MobilePhaseSegment
    domain_of:
    - MobilePhaseSegment
    range: float
  used_in_chromatography_config:
    name: used_in_chromatography_config
    description: The chromatography configuration in which this mobile phase segment
      is used.
    from_schema: https://emsl-computing.github.io/BASALT-Schema/mass-spec
    rank: 1000
    alias: used_in_chromatography_config
    owner: MobilePhaseSegment
    domain_of:
    - MobilePhaseSegment
    range: ChromatographyConfiguration
  duration_min:
    name: duration_min
    description: how long something took, in minutes
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: duration_min
    owner: MobilePhaseSegment
    domain_of:
    - ChromatographyConfiguration
    - MobilePhaseSegment
    - ChemicalConversionProcess
    range: float
  mobile_phase:
    name: mobile_phase
    description: Description of a mobile phase used in a chromatography method (e.g.,
      solvents, gradients)
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: mobile_phase
    owner: MobilePhaseSegment
    domain_of:
    - MobilePhaseSegment
    range: MobilePhase
  flow_rate_ul_min:
    name: flow_rate_ul_min
    description: Flow rate of the mobile phase, in microliters per minute.
    title: flow rate (uL/min)
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: flow_rate_ul_min
    owner: MobilePhaseSegment
    domain_of:
    - ChromatographyConfiguration
    - MobilePhaseSegment
    range: float
  step_number:
    name: step_number
    description: 'Integer ordering within a multi-step process for the same analyte.

      Lower = earlier in process.'
    from_schema: https://emsl-computing.github.io/BASALT-Schema
    rank: 1000
    alias: step_number
    owner: MobilePhaseSegment
    domain_of:
    - ProcessingSampleLink
    - MobilePhaseSegment
    range: integer