Class: WellReading

Per-well measurement data. NOT a standalone database table; embedded structured entries under

PlateProduct.well_readings.

 classDiagram
    class WellReading
    click WellReading href "../WellReading/"
      WellReading : flag

      WellReading : position

      WellReading : value

Slots

Name	Cardinality and Range	Description	Inheritance
position	1 String	Well position (e	direct
value	1 Float	Measured value (absorbance, OD, fluorescence)	direct
flag	0..1 String	QC flag "ok", "blank", "outlier", "contaminated"	direct

Usages

used by	used in	type	used
PlateProduct	well_readings	range	WellReading
AMP2ODProduct	well_readings	range	WellReading
EcoplateAbsorbanceProduct	well_readings	range	WellReading

TODOs

add optical_density_method here to flag what value means if we have multiple OD methods (e.g. OD600 vs OD750)
units for value slot

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:WellReading
native	basalt_schema:WellReading

LinkML Source

Direct

name: WellReading
description: 'Per-well measurement data. NOT a standalone database table; embedded
  structured entries under

  PlateProduct.well_readings.'
todos:
- add optical_density_method here to flag what value means if we have multiple OD
  methods (e.g. OD600 vs OD750)
- units for value slot
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  position:
    name: position
    description: Well position (e.g. "A01")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    domain_of:
    - WellMetadata
    - WellReading
    range: string
    required: true
  value:
    name: value
    description: Measured value (absorbance, OD, fluorescence)
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    domain_of:
    - WellReading
    range: float
    required: true
  flag:
    name: flag
    description: QC flag   "ok", "blank", "outlier", "contaminated"
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    domain_of:
    - WellReading
    - BulkDensityProduct
    - EnzymeProduct
    - GWCMoistureProduct
    - HydraulicPropertiesProduct
    - PhosphorusAnalysisProduct
    - RespirationProduct
    - TextureProduct
    - pHProduct
    range: string

Induced

name: WellReading
description: 'Per-well measurement data. NOT a standalone database table; embedded
  structured entries under

  PlateProduct.well_readings.'
todos:
- add optical_density_method here to flag what value means if we have multiple OD
  methods (e.g. OD600 vs OD750)
- units for value slot
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  position:
    name: position
    description: Well position (e.g. "A01")
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    alias: position
    owner: WellReading
    domain_of:
    - WellMetadata
    - WellReading
    range: string
    required: true
  value:
    name: value
    description: Measured value (absorbance, OD, fluorescence)
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: value
    owner: WellReading
    domain_of:
    - WellReading
    range: float
    required: true
  flag:
    name: flag
    description: QC flag   "ok", "blank", "outlier", "contaminated"
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/media-strain-culture-plate
    rank: 1000
    alias: flag
    owner: WellReading
    domain_of:
    - WellReading
    - BulkDensityProduct
    - EnzymeProduct
    - GWCMoistureProduct
    - HydraulicPropertiesProduct
    - PhosphorusAnalysisProduct
    - RespirationProduct
    - TextureProduct
    - pHProduct
    range: string