Slot: broad-scale environmental context (env_broad_scale)

'Report the major environmental system the sample or specimen came from. The system identified should have a coarse spatial grain to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'

URI: basalt_schema:env_broad_scale Alias: env_broad_scale

Applicable Classes

Name	Description	Modifies Slot
CultureEnvironmentalSample	A sample containing organisms cultured from an environmental sample	no
AerosolSample	An aerosol sample collected from the environment	no
AerosolArmSample	An aerosol sample collected by the ARM facility	no
OtherUndescribedSample	A sample that does not fit into any of the other described sample types	no
MonetSoilSample	A soil sample that has been collected according to the MONet soil sampling pr...	no
SoilSample	A sample of soil collected from the environment	no
FieldDeployedTerraformSample	A sample collected from a field-deployed Terraform experiment	no
PureCultureSample	A sample of a culture containing a single organism	no
PlantSample	A sample containing plant material	no
TerraformSample	A sample collected from a Terraform experiment	no
SedimentSample	A sample of sediment collected from the environment	no
WaterSample	A sample of water collected from the environment	no

Properties

Type and Range

Property	Value
Range	String
Domain Of	AerosolArmSample, AerosolSample, CultureEnvironmentalSample, FieldDeployedTerraformSample, MonetSoilSample, OtherUndescribedSample, PlantSample, PureCultureSample, SedimentSample, SoilSample, TerraformSample, WaterSample

Cardinality and Requirements

Property	Value
### Value Constraints

Property	Value
Regex Pattern	`^_\s[a-zA-Z\s]+\[ENVO:\d+\]$`

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:env_broad_scale
native	basalt_schema:env_broad_scale

LinkML Source

name: env_broad_scale
description: '''Report the major environmental system the sample or specimen came
  from. The system identified should have a coarse spatial grain to provide the general
  environmental context of where the sampling was done (e.g. in the desert or a rainforest).
  We recommend using subclasses of EnvO''''s biome class: http://purl.obolibrary.org/obo/ENVO_00000428.
  EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'''
title: broad-scale environmental context
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
rank: 1000
alias: env_broad_scale
domain_of:
- AerosolArmSample
- AerosolSample
- CultureEnvironmentalSample
- FieldDeployedTerraformSample
- MonetSoilSample
- OtherUndescribedSample
- PlantSample
- PureCultureSample
- SedimentSample
- SoilSample
- TerraformSample
- WaterSample
range: string
pattern: ^_*\s*[a-zA-Z\s]+\[ENVO:\d+\]$