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Slot: in_protocol

The SampleProcessingProtocol (the recipe) that this step follows. Type-level, not instance-level: every execution of the same SOP points at the same record, so this does NOT identify a particular chain. Use in_run for that. A chain may mix protocols, so this is recorded per step rather than per run.

URI: basalt_schema:in_protocol Alias: in_protocol

Applicable Classes

Name Description Modifies Slot
MediaPreparation Activity that prepares a batch of growth media no
CultureGrowth Abstract activity for growing cultures from samples or other cultures no
StandardSampleProcessing A concrete SampleProcessing subclass for well-documented standard protocols t... no
ProteinQuantification A protein quantification assay (e no
NormalizationProcess A process that adjusts sample amounts (e no
PlateSetupActivity Abstract base for 96-well plate setup activities no
StockCulturePreparation Preparation of a stock culture from user samples for long-term storage no
SampleProcessing Abstract base for any sample processing activity (physical to physical): one no
AMP2PlateSetupActivity AMP2-specific plate setup no
EcoplatePlateSetupActivity Ecoplate-specific plate setup no
SolidPhaseExtractionProcess A solid phase extraction (SPE) step (e no
StrainPurity Purity check of a strain culture no
ResuspensionProcess Resuspension of an analyte (e no
Extraction The removal and isolation of a desired analyte from other material in a samp... no
PreCultureGrowth Growth of a pre-culture to establish viable inoculum before no
SubsamplingProcess A laboratory subsampling process that takes a portion of an existing sample ... no
ChemicalConversionProcess A chemical conversion process used in sample preparation no
ExperimentalCulture Growth of an experimental culture for downstream analysis no
FractionationProcess A fractionation process (e no
FiltrationProcess The process of segregation of phases; e no
PoolingProcess A laboratory pooling process that physically mixes multiple input samples int... no

Properties

Type and Range

Property Value
Range SampleProcessingProtocol
Domain Of SampleProcessing

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self basalt_schema:in_protocol
native basalt_schema:in_protocol

LinkML Source

name: in_protocol
description: 'The SampleProcessingProtocol (the recipe) that this step follows. Type-level,
  not instance-level: every execution of the same SOP points at the same record, so
  this does NOT identify a particular chain. Use in_run for that. A chain may mix
  protocols, so this is recorded per step rather than per run.'
from_schema: https://emsl-computing.github.io/BASALT-Schema
rank: 1000
alias: in_protocol
domain_of:
- SampleProcessing
range: SampleProcessingProtocol