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Class: ProcessingSampleLink

A link between a processed sample and the sample processing activity that produced it.

This class captures the relationship between a processed sample and the sample processing

activity that generated it, including the step number and role of the sample in the process.

URI: basalt_schema:ProcessingSampleLink

 classDiagram
    class ProcessingSampleLink
    click ProcessingSampleLink href "../ProcessingSampleLink/"
      ProcessingSampleLink : id

      ProcessingSampleLink : processing_id





        ProcessingSampleLink --> "1" SampleProcessing : processing_id
        click SampleProcessing href "../SampleProcessing/"



      ProcessingSampleLink : role





        ProcessingSampleLink --> "1" SampleRole : role
        click SampleRole href "../SampleRole/"



      ProcessingSampleLink : sample_base_id





        ProcessingSampleLink --> "1" Sample : sample_base_id
        click Sample href "../Sample/"



      ProcessingSampleLink : step_number

Slots

Name Cardinality and Range Description Inheritance
id 1
Uuid		 direct
sample_base_id 1
Sample		 direct
processing_id 1
SampleProcessing		 direct
step_number 1
Integer		 direct
role 1
SampleRole		 direct

Unique Keys

unique_sample_process_step

Unique key slots: sample_base_id, processing_id, step_number, role

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self basalt_schema:ProcessingSampleLink
native basalt_schema:ProcessingSampleLink

LinkML Source

Direct

name: ProcessingSampleLink
description: 'A link between a processed sample and the sample processing activity
  that produced it.

  This class captures the relationship between a processed sample and the sample processing

  activity that generated it, including the step number and role of the sample in
  the process.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  sample_base_id:
    name: sample_base_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ProcessingSampleLink
    range: Sample
    required: true
  processing_id:
    name: processing_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ProcessingSampleLink
    range: SampleProcessing
    required: true
  step_number:
    name: step_number
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ProcessingSampleLink
    range: integer
    required: true
  role:
    name: role
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - ProcessingSampleLink
    - ProjectParticipant
    range: SampleRole
    required: true
unique_keys:
  unique_sample_process_step:
    unique_key_name: unique_sample_process_step
    unique_key_slots:
    - sample_base_id
    - processing_id
    - step_number
    - role

Induced

name: ProcessingSampleLink
description: 'A link between a processed sample and the sample processing activity
  that produced it.

  This class captures the relationship between a processed sample and the sample processing

  activity that generated it, including the step number and role of the sample in
  the process.'
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    identifier: true
    alias: id
    owner: ProcessingSampleLink
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  sample_base_id:
    name: sample_base_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: sample_base_id
    owner: ProcessingSampleLink
    domain_of:
    - ProcessingSampleLink
    range: Sample
    required: true
  processing_id:
    name: processing_id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: processing_id
    owner: ProcessingSampleLink
    domain_of:
    - ProcessingSampleLink
    range: SampleProcessing
    required: true
  step_number:
    name: step_number
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: step_number
    owner: ProcessingSampleLink
    domain_of:
    - ProcessingSampleLink
    range: integer
    required: true
  role:
    name: role
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: role
    owner: ProcessingSampleLink
    domain_of:
    - ProcessingSampleLink
    - ProjectParticipant
    range: SampleRole
    required: true
unique_keys:
  unique_sample_process_step:
    unique_key_name: unique_sample_process_step
    unique_key_slots:
    - sample_base_id
    - processing_id
    - step_number
    - role