Class: Activity

Something that happens over time and can use equipment.

NOTE: this is an abstract class and should not be instantiated directly

 classDiagram
    class Activity
    click Activity href "../Activity/"
      Activity : description

      Activity : ended_at_time

      Activity : id

      Activity : name

      Activity : processing_institution





        Activity --> "0..1" InstitutionEnum : processing_institution
        click InstitutionEnum href "../InstitutionEnum/"



      Activity : protocol_link

      Activity : started_at_time

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 String	Human-readable name for the entity or activity	direct
description	0..1 String	Human-readable description for the entity or activity	direct
id	1 Uuid		direct
ended_at_time	0..1 Datetime		direct
processing_institution	0..1 InstitutionEnum	The institution where the activity took place	direct
protocol_link	0..1 String	A link to a protocol that describes the steps and parameters of the activity	direct
started_at_time	0..1 Datetime		direct

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:Activity
native	basalt_schema:Activity

LinkML Source

Direct

name: Activity
description: Something that happens over time and can use equipment.
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
abstract: true
slots:
- name
- description
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  ended_at_time:
    name: ended_at_time
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - Activity
    - DataProcessingActivity
    range: datetime
  processing_institution:
    name: processing_institution
    description: The institution where the activity took place.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - Activity
    range: InstitutionEnum
  protocol_link:
    name: protocol_link
    description: A link to a protocol that describes the steps and parameters of the
      activity.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - Activity
    range: string
  started_at_time:
    name: started_at_time
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    domain_of:
    - Activity
    - DataProcessingActivity
    range: datetime

Induced

name: Activity
description: Something that happens over time and can use equipment.
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
abstract: true
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    identifier: true
    alias: id
    owner: Activity
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
  ended_at_time:
    name: ended_at_time
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: ended_at_time
    owner: Activity
    domain_of:
    - Activity
    - DataProcessingActivity
    range: datetime
  processing_institution:
    name: processing_institution
    description: The institution where the activity took place.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: processing_institution
    owner: Activity
    domain_of:
    - Activity
    range: InstitutionEnum
  protocol_link:
    name: protocol_link
    description: A link to a protocol that describes the steps and parameters of the
      activity.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: protocol_link
    owner: Activity
    domain_of:
    - Activity
    range: string
  started_at_time:
    name: started_at_time
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: started_at_time
    owner: Activity
    domain_of:
    - Activity
    - DataProcessingActivity
    range: datetime
  name:
    name: name
    description: Human-readable name for the entity or activity.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: name
    owner: Activity
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - Instrument
    - OntologyClass
    - ContainerAxis
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - SoftwareControlledTermValue
    range: string
    required: true
  description:
    name: description
    description: Human-readable description for the entity or activity
    title: description
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: description
    owner: Activity
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string