Class: MassSpectrometryStandardRun

A record of a mass spectrometry standard run with a batch of samples, which is used for calibration and quality control.

URI: basalt_schema:MassSpectrometryStandardRun

 classDiagram
    class MassSpectrometryStandardRun
    click MassSpectrometryStandardRun href "../MassSpectrometryStandardRun/"
      MassSpectrometryStandardRun : calibration_data





        MassSpectrometryStandardRun --> "0..1" MassSpectrometryInstrumentData : calibration_data
        click MassSpectrometryInstrumentData href "../MassSpectrometryInstrumentData/"



      MassSpectrometryStandardRun : calibration_standard





        MassSpectrometryStandardRun --> "0..1" PurchasedMaterial : calibration_standard
        click PurchasedMaterial href "../PurchasedMaterial/"



      MassSpectrometryStandardRun : calibration_target





        MassSpectrometryStandardRun --> "0..1" CalibrationTargetEnum : calibration_target
        click CalibrationTargetEnum href "../CalibrationTargetEnum/"



      MassSpectrometryStandardRun : description

      MassSpectrometryStandardRun : id

      MassSpectrometryStandardRun : internal_calibration

      MassSpectrometryStandardRun : name

Slots

Name	Cardinality and Range	Description	Inheritance
name	1 String	Human-readable name for the entity or activity	direct
description	0..1 String	Human-readable description for the entity or activity	direct
internal_calibration	0..1 Boolean	Whether internal calibration was used	direct
calibration_target	0..1 CalibrationTargetEnum	The measurement being calibrated	direct
calibration_standard	0..1 PurchasedMaterial	The reference standard used for calibration	direct
calibration_data	0..1 MassSpectrometryInstrumentData	Reference to the raw instrument data file used for calibration	direct
id	1 Uuid		direct

Usages

used by	used in	type	used
MassSpectrometryDataProcessingActivity	uses_calibration	range	MassSpectrometryStandardRun

Identifier and Mapping Information

Schema Source

from schema: https://EMSL-Computing.github.io/BASALT-Schema

Mappings

Mapping Type	Mapped Value
self	basalt_schema:MassSpectrometryStandardRun
native	basalt_schema:MassSpectrometryStandardRun

LinkML Source

Direct

name: MassSpectrometryStandardRun
description: A record of a mass spectrometry standard run with a batch of samples,
  which is used for calibration and quality control.
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
slots:
- name
- description
- internal_calibration
- calibration_target
- calibration_standard
- calibration_data
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/mass-spec
    identifier: true
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true

Induced

name: MassSpectrometryStandardRun
description: A record of a mass spectrometry standard run with a batch of samples,
  which is used for calibration and quality control.
from_schema: https://EMSL-Computing.github.io/BASALT-Schema
attributes:
  id:
    name: id
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema/mass-spec
    identifier: true
    alias: id
    owner: MassSpectrometryStandardRun
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - AlternativeIdentifier
    - FunctionalAnnotationIdentifier
    - Instrument
    - OntologyClass
    - ContainerType
    - Custodian
    - InstrumentAlternativeIdentifier
    - LabDevice
    - SampleProcessing
    - ProcessingSampleLink
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - MAOMProduct
    - WEOMProduct
    - Site
    - Sample
    - AerosolArmSample
    - AerosolSample
    - AMP2UserSample
    - CommerciallyPurchasedSample
    - CultureEnvironmentalSample
    - EngineeredStrainSample
    - FieldDeployedTerraformSample
    - MixedCultureSample
    - MonetSoilSample
    - OtherUndescribedSample
    - PlantSample
    - PureCultureSample
    - SedimentSample
    - SoilSample
    - SynthesizedMaterialSample
    - TerraformSample
    - WaterSample
    - ProcessedSample
    - CoreSection
    - SamplingActivity
    - AerosolArmSamplingActivity
    - AerosolSamplingActivity
    - CommerciallyPurchasedSamplingActivity
    - CultureEnvironmentalSamplingActivity
    - EngineeredStrainSamplingActivity
    - FieldDeployedTerraformSamplingActivity
    - MixedCultureSamplingActivity
    - MonetSoilSamplingActivity
    - OtherUndescribedSamplingActivity
    - PlantSamplingActivity
    - PureCultureSamplingActivity
    - SedimentSamplingActivity
    - SoilSamplingActivity
    - SynthesizedMaterialSamplingActivity
    - TerraformSamplingActivity
    - WaterSamplingActivity
    - Study
    - ProjectParticipant
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - PersonValue
    - QuantityValue
    - ConditioningValue
    - zipDownload
    range: uuid
    required: true
  name:
    name: name
    description: Human-readable name for the entity or activity.
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: name
    owner: MassSpectrometryStandardRun
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - Instrument
    - OntologyClass
    - ContainerAxis
    - Configuration
    - MobilePhaseSegment
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - SoftwareControlledTermValue
    range: string
    required: true
  description:
    name: description
    description: Human-readable description for the entity or activity
    title: description
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: description
    owner: MassSpectrometryStandardRun
    domain_of:
    - Activity
    - Entity
    - DataProduct
    - DataGenerationActivity
    - DataProcessingActivity
    - OntologyClass
    - ContainerType
    - LabDevice
    - Configuration
    - MassSpectrometryStandardRun
    - PurchasedMaterial
    - LabProcessingActivity
    - organism
    - Site
    - Sample
    - SamplingActivity
    - SoilSamplingActivity
    - Study
    - TimestampValue
    - TextValue
    - SoftwareControlledTermValue
    - ControlledTermValue
    - QuantityValue
    range: string
  internal_calibration:
    name: internal_calibration
    description: Whether internal calibration was used
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: internal_calibration
    owner: MassSpectrometryStandardRun
    domain_of:
    - MassSpectrometryStandardRun
    range: boolean
  calibration_target:
    name: calibration_target
    description: The measurement being calibrated
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: calibration_target
    owner: MassSpectrometryStandardRun
    domain_of:
    - MassSpectrometryStandardRun
    range: CalibrationTargetEnum
  calibration_standard:
    name: calibration_standard
    description: The reference standard used for calibration
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: calibration_standard
    owner: MassSpectrometryStandardRun
    domain_of:
    - MassSpectrometryStandardRun
    range: PurchasedMaterial
  calibration_data:
    name: calibration_data
    description: Reference to the raw instrument data file used for calibration
    from_schema: https://EMSL-Computing.github.io/BASALT-Schema
    rank: 1000
    alias: calibration_data
    owner: MassSpectrometryStandardRun
    domain_of:
    - MassSpectrometryStandardRun
    range: MassSpectrometryInstrumentData