Default plot method for emetaFilt

# S3 method for emetaFilt
plot(
  x,
  min_val = NA,
  max_val = NA,
  cats = NA,
  na.rm = TRUE,
  title = NA,
  xlabel = attr(x, "cname"),
  ylabel = "Count",
  ...
)

Arguments

x: object of class emeta_filter
min_val: a numeric value specifying the minimum value (inclusive) that a peak should have for the specified 'e_meta' column
max_val: a numeric value specifying the maximum value (inclusive) that a peak should have for the specified 'e_meta' column
cats: a vector of character values specifying the level(s) of the specified 'e_meta' column which should be retained
na.rm: logical value specifying if peaks with NA values for the specified 'e_meta' column should be removed. Default value is TRUE
title: plot title
xlabel: x-axis label, default is the column of emeta used to construct x
ylabel: y-axis label
...: other arguments

Value

plotly plot object

Examples

if (FALSE) {
# Emeta filter based on the "OtoC_ratio" column (numeric variable)
filter_object1 = emeta_filter(exampleProcessedPeakData, cname = "OtoC_ratio")

# Plots the distribution of OtoC_ratio
plot(filter_object1)

# Demonstrates retaining values between 0.5 and 1
plot(filter_object1, min_val = 0.5, max_val = 1)

# Emeta filter based on the "MolForm" column (categorical variable)
filter_object2 = emeta_filter(exampleProcessedPeakData, cname = "MolForm")

# Only non-NAs retained
plot(filter_object2)

# Peaks matching "C10" retained
plot(filter_object2, cats=grep("C10", filter_object2$emeta_value, value = TRUE))
}