Constructs a Kendrick plot (Kendrick defect vs Kendrick mass) for an object of type ftmsData.
kendrickPlot(
ftmsObj,
title = NA,
colorPal = NA,
colorCName = NA,
vkBoundarySet = "bs1",
xlabel = "Kendrick Mass",
ylabel = "Kendrick Defect",
legendTitle = colorCName,
base_compound = NULL
)an object of class 'peakData' or 'compoundData', typically a result of as.peakData or mapPeaksToCompounds.
plot title
color palette function, one of col_numeric, col_factor or similar scales palette function
column name of ftmsObj$e_meta to use for coloring the points. If NA and vkBoundarySet is provided, the points will be colored according to the Van Krevelen category.
character vector specifying which boundary set to use when determining class. Valid options are currently "bs1" and "bs2" and defaults to "bs1". See details of assign_class for differences in sets.
x axis label, default is "Kendrick Mass"
y axis label, default is "Kendrick Defect"
title for the legend, only used when coloring points according to a numeric scale
string specifying the base compound used to calculate the Kendrick Mass you want plotted on the x-axis. Defaults to NULL, in which case the first Kendrick Mass is used.
a plotly object
plot_ly