Plot to look at the percentage of each class in the data

Constructs stacked bar plot to look at the percentage of each class in the data

classesPlot(
  ftmsObj,
  xaxis = NULL,
  ylabel = "Percentage of Chemical Classes",
  title = NULL,
  vkBoundarySet = "bs1",
  classColName = NULL
)

Arguments

ftmsObj: ftmsData object of class peakData or compoundData
xaxis: x axis variable. If NULL, will use attr(ftmsObj, "cnames")$fdata_cname. Must be one of colnames(ftmsObj$f_data) or colnames(attr(ftmsObj, "group_DF")).
ylabel: y axis label, default is "Density"
title: plot title, default is NULL
vkBoundarySet: character vector specifying which boundary set to use when determining class. Valid options are currently "bs1" and "bs2" and defaults to "bs1". See details of assign_class for differences in sets.
classColName: column name of ftmsData$e_meta to use for classes (if classes have been precomputed)

a plotly object

Allison Thompson