Slot: organism_ref
FK reference to an organism representing the biological identity
strain, isolate, engineered construct) that this sample or activity
is associated with.
URI: basalt_schema:organism_ref Alias: organism_ref
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| AMP2UserSample | A user-submitted microbial sample for AMP2 workflows | yes |
| CultureGrowth | Abstract activity for growing cultures from samples or other cultures | no |
| PreCultureGrowth | Growth of a pre-culture to establish viable inoculum before | no |
| StockCulturePreparation | Preparation of a stock culture from user samples for long-term storage | no |
| ExperimentalCulture | Growth of an experimental culture for downstream analysis | no |
| EngineeredStrainSample | A sample containing a strain of an organism that has been subjected to geneti... | no |
| StrainPurity | Purity check of a strain culture | no |
Properties
Type and Range
| Property | Value |
|---|---|
| Range | Organism |
| Domain Of | CultureGrowth, AMP2UserSample, EngineeredStrainSample |
Cardinality and Requirements
| Property | Value |
|---|---|
Aliases
- strain_ref
- strain_id
Identifier and Mapping Information
Schema Source
- from schema: https://emsl-computing.github.io/BASALT-Schema
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | basalt_schema:organism_ref |
| native | basalt_schema:organism_ref |
LinkML Source
name: organism_ref
description: 'FK reference to an organism representing the biological identity
strain, isolate, engineered construct) that this sample or activity
is associated with.'
from_schema: https://emsl-computing.github.io/BASALT-Schema
aliases:
- strain_ref
- strain_id
rank: 1000
alias: organism_ref
domain_of:
- CultureGrowth
- AMP2UserSample
- EngineeredStrainSample
range: organism
required: false