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Slot: in_protocol

The SampleProcessingProtocol (the recipe) that this step follows. Type-level, not instance-level: every execution of the same SOP points at the same record, so this does NOT identify a particular chain. Use in_run for that. A chain may mix protocols, so this is recorded per step rather than per run.

URI: basalt_schema:in_protocol Alias: in_protocol

Applicable Classes

Name Description Modifies Slot
MediaPreparation Activity that prepares a batch of growth media no
ExperimentalCulture Growth of an experimental culture for downstream analysis no
AMP2PlateSetupActivity AMP2-specific plate setup no
EcoplatePlateSetupActivity Ecoplate-specific plate setup no
PlateSetupActivity Abstract base for 96-well plate setup activities no
FractionationProcess A fractionation process (e no
PoolingProcess A laboratory pooling process that physically mixes multiple input samples int... no
StandardSampleProcessing A concrete SampleProcessing subclass for well-documented standard protocols t... no
SampleProcessing Abstract base for any sample processing activity (physical to physical): one no
Extraction The removal and isolation of a desired analyte from other material in a samp... no
ProteinQuantification A protein quantification assay (e no
ChemicalConversionProcess A chemical conversion process used in sample preparation no
CultureGrowth Abstract activity for growing cultures from samples or other cultures no
StrainPurity Purity check of a strain culture no
PreCultureGrowth Growth of a pre-culture to establish viable inoculum before no
SubsamplingProcess A laboratory subsampling process that takes a portion of an existing sample ... no
NormalizationProcess A process that adjusts sample amounts (e no
StockCulturePreparation Preparation of a stock culture from user samples for long-term storage no
FiltrationProcess The process of segregation of phases; e no
SolidPhaseExtractionProcess A solid phase extraction (SPE) step (e no
ResuspensionProcess Resuspension of an analyte (e no

Properties

Type and Range

Property Value
Range SampleProcessingProtocol
Domain Of SampleProcessing

Cardinality and Requirements

Property Value

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self basalt_schema:in_protocol
native basalt_schema:in_protocol

LinkML Source

name: in_protocol
description: 'The SampleProcessingProtocol (the recipe) that this step follows. Type-level,
  not instance-level: every execution of the same SOP points at the same record, so
  this does NOT identify a particular chain. Use in_run for that. A chain may mix
  protocols, so this is recorded per step rather than per run.'
from_schema: https://emsl-computing.github.io/BASALT-Schema
rank: 1000
alias: in_protocol
domain_of:
- SampleProcessing
range: SampleProcessingProtocol